Browse Element(s) Details


Os.54393.1.S1_at

Description gb:AK106293.1
DB_XREF= gi:32991502
TID=Os.54393.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54393 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B08, full insert sequence.
FL= gb:AK103884.1 gb:AK106293.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4808011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54393.1.S1_at--969--6191Chr07:28698624..28698648 (25 bp)
GAGGCACTCATTTCATGATTCTTCC
LOC_Os07g48080
Os.54393.1.S1_at--464--2991Chr07:28698793..28698817 (25 bp)
AATGTTTCACTTGGTCAGATCCTGA
LOC_Os07g48080
Os.54393.1.S1_at--1138--5431Chr07:28698816..28698840 (25 bp)
GAACCGGAGGAATGCTGTTTTCTGT
LOC_Os07g48080
Os.54393.1.S1_at--367--5591Chr07:28698885..28698909 (25 bp)
GAAATTTGCCTTCACAGGGCTTTCA
LOC_Os07g48080
Os.54393.1.S1_at--766--1251Chr07:28698961..28698985 (25 bp)
AGATTAGAGCCTATCTGCCCAAGGT
LOC_Os07g48080
Os.54393.1.S1_at--613--9151Chr07:28698976..28699000 (25 bp)
TGCCCAAGGTTTACCTAAGCCTGAA
LOC_Os07g48080
Os.54393.1.S1_at--464--8811Chr07:28699016..28699040 (25 bp)
TGTTGTGACCACTATTTCCATGTTC
LOC_Os07g48080
Os.54393.1.S1_at--797--6911Chr07:28699043..28699067 (25 bp)
GTATGTTAGTTGGTTCTGGCCCTGC
LOC_Os07g48080
Os.54393.1.S1_at--313--4651Chr07:28699066..28699090 (25 bp)
GCGTCCTCTGAATCTGTTATTGCCC
LOC_Os07g48080
Os.54393.1.S1_at--296--191Chr07:28699102..28699126 (25 bp)
ATTTCTCTAGGATGACTGGTTGCGG
LOC_Os07g48080
Os.54393.1.S1_at--730--5751Chr07:28699144..28699168 (25 bp)
GACGGTATTGCAGTCCTTTCTATAA
LOC_Os07g48080
Target Sequence 
GAGGCACTCATTTCATGATTCTTCCAAGTTAAAAAATGCAGCAGATATCACTGACGTTTCAAAGAGCTTCTTGAAGCCAA
CACTGTCAATTGGGCAGATATTGAATCTGAAGCTAATGGGACCTGATGGGTATGACAAAAGCGTTTGGGATGATACAACT
GAAGCTTCAAATGTTTCACTTGGTCAGATCCTGAACCGGAGGAATGCTGTTTTCTGTAACAGTGATATAACTTCTCAGAA
GATATTGTCAGGAAAAAGGAAGAAATTTGCCTTCACAGGGCTTTCAGTTTTGTTGGCAAAACAAGCCAAGAGGCAAGAGC
AAGAGAAATAGAGGATCAGATTAGAGCCTATCTGCCCAAGGTTTACCTAAGCCTGAAACAGTAGGTGATGAATGTTGTGA
CCACTATTTCCATGTTCATGTATGTTAGTTGGTTCTGGCCCTGCGTCCTCTGAATCTGTTATTGCCCTCTCACACATGAT
TTCTCTAGGATGACTGGTTGCGGATTAGGAACGTAAAACTGACGGTATTGCAGTCCTTTCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis