Browse Element(s) Details


OsAffx.28949.1.S1_x_at

Description tigr:9635.m04848
TID=OsAffx.28949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g480708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28949.1.S1_x_at--59--7631Chr07:28692226..28692250 (25 bp)
GGGACCCATGGATCGACGCGCCACG
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--94--8111Chr07:28692225..28692249 (25 bp)
GGACCCATGGATCGACGCGCCACGA
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--919--1811Chr07:28692223..28692247 (25 bp)
ACCCATGGATCGACGCGCCACGAGG
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--106--4351Chr07:28692221..28692245 (25 bp)
CCATGGATCGACGCGCCACGAGGGA
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--771--3491Chr07:28692220..28692244 (25 bp)
CATGGATCGACGCGCCACGAGGGAG
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--294--6391Chr07:28692216..28692240 (25 bp)
GATCGACGCGCCACGAGGGAGGTCG
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--1112--7551Chr07:28691933..28692206 (25 bp)
GGGCTGTCGCCGCCAGGTTTTATTA
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--750--8331Chr07:28691932..28692205 (25 bp)
GGCTGTCGCCGCCAGGTTTTATTAT
LOC_Os07g48070
OsAffx.28949.1.S1_x_at--7--4711NONE
GCTGTCGCCGCCAGGTTTTATTATT
NONE
OsAffx.28949.1.S1_x_at--54--3891Chr05:28707506..28707699 (25 bp)
CTGTCGCCGCCAGGTTTTATTATTT
NONE
OsAffx.28949.1.S1_x_at--327--8691Chr05:28707505..28707698 (25 bp)
TGTCGCCGCCAGGTTTTATTATTTT
NONE
Target Sequence 
GGGACCCATGGATCGACGCGCCACGAGGGAGGTCGCGGGTGCGGGGGCTGTCGCCGCCAGGTTTTATTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28949.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis