Browse Element(s) Details


Os.11556.1.S1_at

Description gb:D16442.1
DB_XREF= gi:303850
TID=Os.11556.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11556 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for peroxidase, complete cds.
PROD=peroxidase
FL= gb:D16442.1 gb:AK073616.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4803011/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein
LOC_Os07g47979NANA7+28655026..28655250NA
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11556.1.S1_at--18--5491Chr07:28677974..28677998 (25 bp)
GAACATCTCGCCCTTGACTGGAACC
LOC_Os07g48030
Os.11556.1.S1_at--570--8291Chr07:28678012..28678036 (25 bp)
GGCTCAACTGCTCCAAGGTTAACTA
LOC_Os07g48030
Os.11556.1.S1_at--314--3211Chr07:28678025..28678049 (25 bp)
CAAGGTTAACTAGCCGGTGATGACG
LOC_Os07g48030
Os.11556.1.S1_at--667--7591Chr07:28678067..28678091 (25 bp)
GGGAATAAAGCTAGGCCCCGACATT
LOC_Os07g48030
Os.11556.1.S1_at--594--291Chr07:28678099..28678123 (25 bp)
ATAGCGTGCAGCTAGCTGTGGCCAT
LOC_Os07g48030
Os.11556.1.S1_at--746--8451Chr07:28678117..28678141 (25 bp)
TGGCCATCTCATCACTTTCATGGTT
LOC_Os07g48030
Os.11556.1.S1_at--249--3211Chr07:28678142..28678166 (25 bp)
CAATGGTTTCATCAGCAAGTGCACG
LOC_Os07g48030
Os.11556.1.S1_at--190--8691Chr07:28678198..28678222 (25 bp)
TGTGATGTCATGTAACGAGTTGCCA
LOC_Os07g48030
Os.11556.1.S1_at--592--691Chr07:28678232..28678256 (25 bp)
ATGAGGATTACGGACCTCTCTTTCG
LOC_Os07g48030
Os.11556.1.S1_at--654--9551Chr07:28678250..28678274 (25 bp)
TCTTTCGTCGTAATCCTAGCAGCTA
LOC_Os07g48030
Os.11556.1.S1_at--378--6531Chr07:28678277..28678301 (25 bp)
GATTTCAACTGTCGTGTTAACCAAG
LOC_Os07g48030
Target Sequence 
GAACATCTCGCCCTTGACTGGAACCCAGGGGCAGATCAGGCTCAACTGCTCCAAGGTTAACTAGCCGGTGATGACGAGTA
CGTGATGGTCTCAGGGAATAAAGCTAGGCCCCGACATTGCTGCCAATAGCGTGCAGCTAGCTGTGGCCATCTCATCACTT
TCATGGTTCAATGGTTTCATCAGCAAGTGCACGGAACAGACTAGAGAGTGTAGGTGTATGCATGTGTGATGTCATGTAAC
GAGTTGCCATGCAAAGGCATGAGGATTACGGACCTCTCTTTCGTCGTAATCCTAGCAGCTACAGATTTCAACTGTCGTGT
TAACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis