Browse Element(s) Details


Os.5034.1.S1_at

Description gb:AK072862.1
DB_XREF= gi:32982885
TID=Os.5034.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023143D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143D07, full insert sequence.
FL= gb:AK072862.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4799011/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47950OsAffx.16758.1.S1_at11/117+28636154..28641083Protein kinase domain containing protein
LOC_Os07g47960OsAffx.28948.1.S1_at11/117+28648014..28649925expressed protein
LOC_Os07g47960Os.19277.1.S1_at1/117+28648014..28649925expressed protein
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein
LOC_Os07g47979NANA7+28655026..28655250NA
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5034.1.S1_at--14--5031Chr07:28659504..28659528 (25 bp)
GCAGTGCCAAAACTTCCGCGACAGG
LOC_Os07g47990
Os.5034.1.S1_at--545--4011Chr07:28659764..28659788 (25 bp)
CGTCGAGGTTCAGAAGGGACTTCGC
LOC_Os07g47990
Os.5034.1.S1_at--335--10731Chr07:28659823..28659847 (25 bp)
TTGACGGGAACGCAGGGACAAATCA
LOC_Os07g47990
Os.5034.1.S1_at--871--1071Chr07:28659836..28659860 (25 bp)
AGGGACAAATCAGGCTCGTCTGCTC
LOC_Os07g47990
Os.5034.1.S1_at--195--4811Chr07:28659849..28659873 (25 bp)
GCTCGTCTGCTCCAAGGTGAATTAA
LOC_Os07g47990
Os.5034.1.S1_at--554--5591Chr07:28659941..28659965 (25 bp)
GAAATCGATATTTGTGCTTTGCACT
LOC_Os07g47990
Os.5034.1.S1_at--264--8851Chr07:28659965..28659989 (25 bp)
TGATCAGTGATCATGTTCACGCTTT
LOC_Os07g47990
Os.5034.1.S1_at--725--3511Chr07:28659976..28660000 (25 bp)
CATGTTCACGCTTTCTTGGATCAAA
LOC_Os07g47990
Os.5034.1.S1_at--431--7251Chr07:28660005..28660029 (25 bp)
GTCCGAGAAAGTGGCGTGTTTGCAA
LOC_Os07g47990
Os.5034.1.S1_at--551--5171Chr07:28660026..28660050 (25 bp)
GCAAGAATTTGATCGTGTACACTGA
LOC_Os07g47990
Os.5034.1.S1_at--88--7451Chr07:28660040..28660064 (25 bp)
GTGTACACTGAATTCTGAAGAGCCC
LOC_Os07g47990
Target Sequence 
GCAGTGCCAAAACTTCCGCGACAGGCTCTACAACGAGACCAACATCGACGCCGCCTTCGCGGCGGCGCTCAAGGCCAGCT
GCCCGCGGCCGACGGGCAGCGGCGACGGCAACCTGGCGCCGCTGGACACGACGACGCCCACCGCGTTCGACAACGCCTAC
TACACCAACCTGCTGTCGAACAAGGGGCTNCCTGCACTCCGACCAGGTGCTCTTCAACGGCGGCGCCGTCGACGGCCAGG
TCCGGTCGTACGCGTCCGGGCCGTCGAGGTTCAGAAGGGACTTCGCGGCGGCCATGGTGAAGATGGGGAACATCGCCCCG
TTGACGGGAACGCAGGGACAAATCAGGCTCGTCTGCTCCAAGGTGAATTAATTAGCGGTGATCATCAACGAAAATTCTGA
GTGCATGAGGGGACAATAATAAGGCTATATATGCCACTGAAATCGATATTTGTGCTTTGCACTGATCAGTGATCATGTTC
ACGCTTTCTTGGATCAAATTGTGTCCGAGAAAGTGGCGTGTTTGCAAGAATTTGATCGTGTACACTGAATTCTGAAGAGC
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis