Browse Element(s) Details


Os.19277.1.S1_at

Description gb:AK106244.1
DB_XREF= gi:32991453
TID=Os.19277.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19277 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPR033
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-D03, full insert sequence.
FL= gb:AB110179.1 gb:AK106244.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0415011/11expressed protein
LOC_Os07g479601/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04110Os.55710.1.S1_at11/117+1741775..1744036Legume lectins beta domain containing protein, expressed
LOC_Os07g04120OsAffx.28257.1.S1_at11/117+1750051..1750806hypothetical protein
LOC_Os07g04120OsAffx.29773.1.S1_s_at1/117+1750051..1750806hypothetical protein
LOC_Os07g04130OsAffx.16075.1.S1_x_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04130OsAffx.16075.1.S1_s_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g04170OsAffx.16076.1.S1_at11/117+1779925..1783726SRF-type transcription factor family protein, expressed
LOC_Os07g04180Os.28079.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_s_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.50789.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_x_at8/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.21238.1.S1_at1/117+1787073..1792926amino acid permease 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19277.1.S1_at--574--5931Chr07:1769372..1769396 (25 bp)
GAGCATGGACGCGTGCCGGCTCTTC
LOC_Os07g04150
Os.19277.1.S1_at--452--5831Chr07:1769308..1769332 (25 bp)
GACCTGCTCCGGTGAGGCACACGAG
LOC_Os07g04150
Os.19277.1.S1_at--467--6391Chr07:1769262..1769286 (25 bp)
GATCGGAATCGGGAACAACATTGTA
LOC_Os07g04150
Os.19277.1.S1_at--228--9431Chr07:1769254..1769278 (25 bp)
TCGGGAACAACATTGTACAGCTAGC
LOC_Os07g04150
Os.19277.1.S1_at--854--9851Chr07:1769239..1769263 (25 bp)
TACAGCTAGCGCTAGCGTTCGTCGT
LOC_Os07g04150
Os.19277.1.S1_at--82--9412Chr07:28649191..28649292 (24 bp)
TCGTCGTTTTCTGGTCTCTGTCGTT
LOC_Os07g47960
Os.19277.1.S1_at--5--8731Chr07:1769197..1769221 (25 bp)
TGTCGTTTTTGTTGGGTGATCAGAT
LOC_Os07g04150
Os.19277.1.S1_at--996--10751Chr07:1769154..1769178 (25 bp)
TTGTTTTTGAAATCACTACTCGTGA
LOC_Os07g04150
Os.19277.1.S1_at--245--3131Chr07:1769081..1769105 (25 bp)
AATTTTGGTAGACTTCTAGGTGCTT
LOC_Os07g04150
Os.19277.1.S1_at--585--5951Chr07:1769015..1769039 (25 bp)
GAGCAAGTTCGGGATCATGATGAAT
LOC_Os07g04150
Os.19277.1.S1_at--380--331Chr07:1768977..1769001 (25 bp)
ATAAAAACTTTTCGTGTCTATTATG
LOC_Os07g04150
Target Sequence 
GAGCATGGACGCGTGCCGGCTCTTCTCCCACCGCCTCCGCCGCGAGCTCTCGGCGTCGCGCTCCGACCTGCTCCGGTGAG
GCACACGAGGCGGCGGTGAATCGATCGATCGATCGGAATCGGGAACAACATTGTACAGCTAGCGCTAGCGTTCGTCGTCG
TCGTTTTCTGGTCTCTGTCGTTTTTGTTGGGTGATCAGATTGTGTTGTGTTTTTTATTTTGTTTTTGAAATCACTACTCG
TGATTTTTTTGTGGTTTTTTTGGGTGGTGAAATGGTGATGAGGGGGTTTGTAATTTTGGTAGACTTCTAGGTGCTTTTTA
AAGTCTAGAAGCAGAGGAGGAAGCAGAAGAAGAAGAAGAGCAAGTTCGGGATCATGATGAATGAATGAACAAGTTATAAA
AACTTTTCGTGTCTATTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis