Browse Element(s) Details


Os.55710.1.S1_at

Description gb:AK108625.1
DB_XREF= gi:32993834
TID=Os.55710.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-E02, full insert sequence.
FL= gb:AK108625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0411011/11Legume lectins beta domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04110Os.55710.1.S1_at11/117+1741775..1744036Legume lectins beta domain containing protein, expressed
LOC_Os07g04120OsAffx.28257.1.S1_at11/117+1750051..1750806hypothetical protein
LOC_Os07g04120OsAffx.29773.1.S1_s_at1/117+1750051..1750806hypothetical protein
LOC_Os07g04130OsAffx.16075.1.S1_x_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04130OsAffx.16075.1.S1_s_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55710.1.S1_at--695--5911Chr07:1743450..1743474 (25 bp)
GAGCTAGCGCGCACAGGTAAAACAT
LOC_Os07g04110
Os.55710.1.S1_at--1132--2391Chr07:1743469..1743493 (25 bp)
AAACATCCCCTCTTACTGACGTATT
LOC_Os07g04110
Os.55710.1.S1_at--299--5771Chr07:1743486..1743510 (25 bp)
GACGTATTTGCATTTGGCGCGTTCC
LOC_Os07g04110
Os.55710.1.S1_at--195--4631Chr07:1743504..1743528 (25 bp)
GCGTTCCTTCTAGAGGTCACTTGTG
LOC_Os07g04110
Os.55710.1.S1_at--775--9751Chr07:1743568..1743592 (25 bp)
TAATGCTAGTTGACCGGGTGCTCGA
LOC_Os07g04110
Os.55710.1.S1_at--272--1211Chr07:1743646..1743670 (25 bp)
AGTTTGACACCGACGAGGCATGCTT
LOC_Os07g04110
Os.55710.1.S1_at--262--7251Chr07:1743705..1743729 (25 bp)
GTCCCTCAAGCAAGGCCTAGCATGA
LOC_Os07g04110
Os.55710.1.S1_at--655--8231Chr07:1743782..1743806 (25 bp)
GGCAAACCTAAGCTTCGGCATGCAG
LOC_Os07g04110
Os.55710.1.S1_at--900--9871Chr07:1743837..1743861 (25 bp)
TACATGATGTCGTACCCATCGTCAT
LOC_Os07g04110
Os.55710.1.S1_at--143--8251Chr07:1743876..1743900 (25 bp)
GGCACATTCATGTCAGGACTCTCAG
LOC_Os07g04110
Os.55710.1.S1_at--96--6231Chr07:1743946..1743970 (25 bp)
GATGGCGATTGATAATACCCGGTAA
LOC_Os07g04110
Target Sequence 
GAGCTAGCGCGCACAGGTAAAACATCCCCTCTTACTGACGTATTTGCATTTGGCGCGTTCCTTCTAGAGGTCACTTGTGG
ACGAAGACCCGTGGAGCATAACAGGCAAGATAACCGGGTAATGCTAGTTGACCGGGTGCTCGAGCATTGGCACAAGGGGT
TACTGACAAAGGCGGTAGACGAAAGGTTACAAGGCGAGTTTGACACCGACGAGGCATGCTTGGTGCTGAAGCTAGGGCTG
CTATGCTCACACCCGGTCCCTCAAGCAAGGCCTAGCATGAGGCAAGCCATGCAATACCTCGACGGAGACATGAAGATGCC
GGAGCTGATACCGGCAAACCTAAGCTTCGGCATGCAGGCCATGATGTCCAATGAAGGGTTCGATTCGTACATGATGTCGT
ACCCATCGTCATCGATGGTGAGCCATGGCACATTCATGTCAGGACTCTCAGGAGGAAGGTGATAGCTAGCTGGCATGAAG
GGGACGGTATGTGATCGATGGCGATTGATAATACCCGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis