Browse Element(s) Details


OsAffx.28257.1.S1_at

Description tigr:9635.m00338
TID=OsAffx.28257.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0412011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04110Os.55710.1.S1_at11/117+1741775..1744036Legume lectins beta domain containing protein, expressed
LOC_Os07g04120OsAffx.28257.1.S1_at11/117+1750051..1750806hypothetical protein
LOC_Os07g04120OsAffx.29773.1.S1_s_at1/117+1750051..1750806hypothetical protein
LOC_Os07g04130OsAffx.16075.1.S1_x_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04130OsAffx.16075.1.S1_s_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28257.1.S1_at--133--10791Chr07:1750533..1750557 (25 bp)
TTGTTGTCGTTGACCTCATCGATGA
LOC_Os07g04120
OsAffx.28257.1.S1_at--154--8011Chr07:1750447..1750471 (25 bp)
GGATGGGTGTATGCTCTTGCCAGAC
LOC_Os07g04120
OsAffx.28257.1.S1_at--645--3631Chr07:1750432..1750456 (25 bp)
CTTGCCAGACTCTTGTAGACTCTTG
LOC_Os07g04120
OsAffx.28257.1.S1_at--777--8751Chr07:1750419..1750443 (25 bp)
TGTAGACTCTTGATGCAGACTTCAT
LOC_Os07g04120
OsAffx.28257.1.S1_at--753--2511Chr07:1750383..1750407 (25 bp)
AACTTCGTCGTCTCAGCAAGACAGG
LOC_Os07g04120
OsAffx.28257.1.S1_at--993--5652Chr03:18580372..18580391 (20 bp)
GACAGGAGGATCTTTGCAGCCACTA
NONE
OsAffx.28257.1.S1_at--437--6611Chr07:1750317..1750341 (25 bp)
GATTGGTCTTTGGTTCAGTCTTCTC
LOC_Os07g04120
OsAffx.28257.1.S1_at--1136--4531Chr07:1750230..1750254 (25 bp)
GCGCGATTTCGGTCAACAGGGTTTT
LOC_Os07g04120
OsAffx.28257.1.S1_at--535--5892Chr03:18580552..18580575 (24 bp)
GAGCTCCGTGGAGATCCTTTGCTGT
NONE
OsAffx.28257.1.S1_at--1013--551Chr07:1750166..1750190 (25 bp)
ATCCTTTGCTGTGTCCGGTGAAGCT
LOC_Os07g04120
OsAffx.28257.1.S1_at--628--3871Chr07:1750099..1750123 (25 bp)
CTGTTTCTGTGGAGGCAGCCGAGAT
LOC_Os07g04120
Target Sequence 
TTGTTGTCGTTGACCTCATCGATGATGGTCCTGGTGCTGGGTGGTCTTGTGGAGGAGGCCATGTTTGGAGTTCTGGAGGC
GGCGGTGGATGGGTGTATGCTCTTGCCAGACTCTTGTAGACTCTTGATGCAGACTTCATCTTCCCCAGCCAACTTCGTCG
TCTCAGCAAGACAGGAGGATCTTTGCAGCCACTACAACGCTCGCATGATGAAGGTTGATTGGTCTTTGGTTCAGTCTTCT
CTTTTGTGCCTGATTAGCAGAAACCATGCCGAGTTTGTCATTCGGGTTGAGCTCGGACCACATGCGCGATTTCGGTCAAC
AGGGTTTTTGTTAGAGTTCCTCAGATTCAATGACGAGCTCCGTGGAGATCCTTTGCTGTGTCCGGTGAAGCTCACACCAA
TATCTACGGCTCAGCATCACACCTCTGTCCTGTGCTGTTTCTGTGGAGGCAGCCGAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis