Browse Element(s) Details


Os.11581.1.S1_at

Description gb:AU055734
DB_XREF= gi:4714617
DB_XREF=AU055734
CLONE=S20025_2Z
TID=Os.11581.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11581 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T48588 (A.thaliana) T48588 hypothetical protein T22N19.60 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0416011/11peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04120OsAffx.28257.1.S1_at11/117+1750051..1750806hypothetical protein
LOC_Os07g04120OsAffx.29773.1.S1_s_at1/117+1750051..1750806hypothetical protein
LOC_Os07g04130OsAffx.16075.1.S1_x_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04130OsAffx.16075.1.S1_s_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g04170OsAffx.16076.1.S1_at11/117+1779925..1783726SRF-type transcription factor family protein, expressed
LOC_Os07g04180Os.28079.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_s_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.50789.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_x_at8/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.21238.1.S1_at1/117+1787073..1792926amino acid permease 6, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11581.1.S1_at--855--7671Chr07:1778092..1778116 (25 bp)
GGGTTGATAGATAAAACTCTCCTGT
LOC_Os07g04160
Os.11581.1.S1_at--189--2431Chr07:1778104..1778128 (25 bp)
AAAACTCTCCTGTTTGACATTGAGC
LOC_Os07g04160
Os.11581.1.S1_at--594--9271Chr07:1778111..1778135 (25 bp)
TCCTGTTTGACATTGAGCTTTTGAA
LOC_Os07g04160
Os.11581.1.S1_at--859--5871Chr07:1778125..1778149 (25 bp)
GAGCTTTTGAAGATTATACCAAGTC
LOC_Os07g04160
Os.11581.1.S1_at--99--6551Chr07:1778136..1778160 (25 bp)
GATTATACCAAGTCAATAGTACATG
LOC_Os07g04160
Os.11581.1.S1_at--298--6291Chr07:1778166..1778189 (24 bp)
GATGTTCATTTGTTCCTTTGAAAGG
LOC_Os07g04160
Os.11581.1.S1_at--324--2191Chr07:1778299..1778323 (25 bp)
ACACAAGTTTTTGGCGTCGTACCAG
LOC_Os07g04160
Os.11581.1.S1_at--525--6951Chr07:1778317..1778341 (25 bp)
GTACCAGTACCAGTCGACATGTAAA
LOC_Os07g04160
Os.11581.1.S1_at--1142--1692Chr08:25324938..25324962 (25 bp)
ACCAATTACATAGTTCGACAGGAAA
NONE
Os.11581.1.S1_at--1103--10276Chr07:1778663..1778687 (25 bp)
TTTGCCAACTAAACAGGCCCTATAT
LOC_Os07g04160
Os.11581.1.S1_at--804--891Chr07:1778677..1778701 (25 bp)
AGGCCCTATATATGCCATCAATTTG
LOC_Os07g04160
Target Sequence 
GGGTTGATAGATAAAACTCTCCTGTTTGACATTGAGCTTTTGAAGATTATACCAAGTCAATAGTACATGTATATGATGTT
CATTTGTTCCTTTGAAAGGCAATGTTGCTGACCNCTTGGAGAAAAAACACACAAGTTTTTGGCGTCGTACCAGTACCAGT
CGACATGTAAATATGGGCCTGTTTAGTTTTCAAACAAAATTTTTNCACGCTGTCACATCGAATGTTTGGACNCATGCATA
GTGTTAAATGTAGAAAAAAAAACCAATTACATAGTTCGACAGGAAATTGCGAGATGAATCTTTTAAGCTTAATTGCGCCA
GGATTTGATAATGTGGTGCTACAATAAACATTTGTTGATGACGGATTAATTAGGCTTGATAAATTCGTCTCGAAGTTTTC
TGGCAGAATCNTGTAATTTNTTNNGTTATTAGACTANCGTTTAATACTTTAAATGTGTGTCCGTATATCCGATGTGACAT
GTAGGGNCAANTTTTTTTGCCAACTAAACAGGCCCTATATATGCCATCAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis