Browse Element(s) Details


OsAffx.16076.1.S1_at

Description tigr:9635.m00344
TID=OsAffx.16076.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0417011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g04170OsAffx.16076.1.S1_at11/117+1779925..1783726SRF-type transcription factor family protein, expressed
LOC_Os07g04180Os.28079.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_s_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.50789.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_x_at8/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.21238.1.S1_at1/117+1787073..1792926amino acid permease 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16076.1.S1_at--795--811Chr07:1783300..1783324 (25 bp)
ATGGTCTCAGATATTTCCGCTACGG
LOC_Os07g04170
OsAffx.16076.1.S1_at--188--1951Chr07:1783330..1783354 (25 bp)
ACTGTTTCCTTCTCCAGAGTTAGTG
LOC_Os07g04170
OsAffx.16076.1.S1_at--44--6071Chr07:1783346..1783370 (25 bp)
GAGTTAGTGCCATCCCAACAATTAC
LOC_Os07g04170
OsAffx.16076.1.S1_at--1151--9871Chr07:1783441..1783465 (25 bp)
TACTAATCAATCATCGGCGGTTCCC
LOC_Os07g04170
OsAffx.16076.1.S1_at--1007--10651Chr07:1783461..1783485 (25 bp)
TTCCCCTGCTGACGCAATGGCAAAT
LOC_Os07g04170
OsAffx.16076.1.S1_at--369--5171Chr07:1783516..1783540 (25 bp)
GCAAGCATGCACTCCCGTAGAGCAA
LOC_Os07g04170
OsAffx.16076.1.S1_at--175--3011Chr07:1783547..1783571 (25 bp)
AATGACAATGCAGTCCATACCCCAA
LOC_Os07g04170
OsAffx.16076.1.S1_at--674--10511Chr07:1783574..1783598 (25 bp)
TTCAGCGACAGTTTCCTTTTGGAGT
LOC_Os07g04170
OsAffx.16076.1.S1_at--114--71Chr07:1783625..1783649 (25 bp)
ATTGCTACTGCTGAACCATTGTGTT
LOC_Os07g04170
OsAffx.16076.1.S1_at--581--31Chr07:1783642..1783666 (25 bp)
ATTGTGTTCTCCTCCTATTGATGAC
LOC_Os07g04170
OsAffx.16076.1.S1_at--629--1211Chr07:1783668..1783692 (25 bp)
AGTTTTTGGCTGACATCGACTGGCT
LOC_Os07g04170
Target Sequence 
ATGGTCTCAGATATTTCCGCTACGGCCACCACTGTTTCCTTCTCCAGAGTTAGTGCCATCCCAACAATTACCACCAGTAT
CACCGCCGCAGAACACAGTGGCACCTCCTCCAATGCATGCTCCATTGGTGCAACAGCCACTTACTAATCAATCATCGGCG
GTTCCCCTGCTGACGCAATGGCAAATGCGTTTTGGGGATCAGCCACCCGCTGAAGTGCAAGCATGCACTCCCGTAGAGCA
ACCTCAGAATGACAATGCAGTCCATACCCCAACCTTCAGCGACAGTTTCCTTTTGGAGTTGTTGGCTGATGTCAGCGATG
ATGGCATTGCTACTGCTGAACCATTGTGTTCTCCTCCTATTGATGACCAGTTTTTGGCTGACATCGACTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis