Browse Element(s) Details


Os.28079.2.S1_s_at

Description gb:AK120257.1
DB_XREF= gi:37989880
TID=Os.28079.2
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046A03, full insert sequence.
FL= gb:AK120257.1 gb:AK106110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0418011/11amino acid permease 6, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os07g04170OsAffx.16076.1.S1_at11/117+1779925..1783726SRF-type transcription factor family protein, expressed
LOC_Os07g04180Os.28079.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_s_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.50789.1.S1_x_at11/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.28079.2.S1_x_at8/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04180Os.21238.1.S1_at1/117+1787073..1792926amino acid permease 6, putative, expressed
LOC_Os07g04190Os.49690.1.S1_s_at11/117+1810500..1814306Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os07g04190Os.49690.1.S1_at1/117+1810500..1814306Receptor protein kinase CLAVATA1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28079.2.S1_s_at--693--3991Chr07:1787582..1787606 (25 bp)
CGTGGATGAACGTGCTCAGCCTCGC
LOC_Os07g04180
Os.28079.2.S1_s_at--499--7991Chr07:1787579..1787603 (25 bp)
GGATGAACGTGCTCAGCCTCGCCTG
LOC_Os07g04180
Os.28079.2.S1_s_at--1108--9591Chr07:1787510..1787534 (25 bp)
TCATCAAATCCGTCGCACATTACAA
LOC_Os07g04180
Os.28079.2.S1_s_at--961--9691Chr07:1787507..1787531 (25 bp)
TCAAATCCGTCGCACATTACAAGCC
LOC_Os07g04180
Os.28079.2.S1_s_at--70--7311Chr07:1787300..1787324 (25 bp)
GTGCGTGTCTTTCAGAGTTCAGATC
LOC_Os07g04180
Os.28079.2.S1_s_at--928--3991Chr07:1787297..1787321 (25 bp)
CGTGTCTTTCAGAGTTCAGATCGAC
LOC_Os07g04180
Os.28079.2.S1_s_at--1007--6831Chr07:1787245..1787269 (25 bp)
GTTTCGTCAGATGTAATTAACTATG
LOC_Os07g04180
Os.28079.2.S1_s_at--585--7111Chr07:1787240..1787264 (25 bp)
GTCAGATGTAATTAACTATGTAAGT
LOC_Os07g04180
Os.28079.2.S1_s_at--401--10051Chr07:1787126..1787150 (25 bp)
TAGTTGCAGAATTTCAGTAGCCTAA
LOC_Os07g04180
Os.28079.2.S1_s_at--41--6671Chr07:1787124..1787148 (25 bp)
GTTGCAGAATTTCAGTAGCCTAAAT
LOC_Os07g04180
Os.28079.2.S1_s_at--729--1451Chr07:1787119..1787143 (25 bp)
AGAATTTCAGTAGCCTAAATGGATG
LOC_Os07g04180
Target Sequence 
CGTGGATGAACGTGCTCAGCCTCGCCTGCCTCGTCGTCTCCCTCCTCGCCGCCGCCGGCTCCATCCAGGGCCTCATCAAA
TCCGTCGCACATTACAAGCCATTCAGCGTCTCCTCATGATCAAATTAATAATTATTTGTTAATACTGATGATGATGATGA
TATGATCCATCGATCGATGAAGAACAAATATATATATATAGCGAGATCGATCGATCGATCAAGATCGTGAATGATATATA
TAATACATAGTTAATCAATCAGATGTTAATTAAGTCGTGTTCGTGCGTGTCTTTCAGAGTTCAGATCGACAGGTTGATTT
GAGATGAGTGCTCAAGTGTTTCGTCAGATGTAATTAACTATGTAAGTGGTAAATTTAGCCTGATGATGATGATGATCAGT
CTGAATGGATGTCATGTAAGTGGTAAATTTGNCATGAATGTAACAAAGTAGTAGCTTAGTTGCAGAATTTCAGTAGCCTA
AATGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28079.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis