Browse Element(s) Details


OsAffx.16075.1.S1_x_at

Description tigr:9635.m00339
TID=OsAffx.16075.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0413011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04110Os.55710.1.S1_at11/117+1741775..1744036Legume lectins beta domain containing protein, expressed
LOC_Os07g04120OsAffx.28257.1.S1_at11/117+1750051..1750806hypothetical protein
LOC_Os07g04120OsAffx.29773.1.S1_s_at1/117+1750051..1750806hypothetical protein
LOC_Os07g04130OsAffx.16075.1.S1_x_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04130OsAffx.16075.1.S1_s_at11/117+1752157..1754196lectin receptor kinase 7, putative
LOC_Os07g04150Os.19277.1.S1_at11/117+1768944..1770859expressed protein
LOC_Os07g04160Os.11581.1.S1_at11/117+1775715..1778847peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16075.1.S1_x_at--587--5911Chr07:1753762..1753786 (25 bp)
GAGCTCACCAGGTTCGGCAAGGCCA
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--175--4631Chr07:1754032..1754056 (25 bp)
GCGAGGCCCGGTATGCGCCTCGTCA
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--251--4051Chr07:1754033..1754057 (25 bp)
CGAGGCCCGGTATGCGCCTCGTCAT
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--704--6211Chr07:1754034..1754058 (25 bp)
GAGGCCCGGTATGCGCCTCGTCATG
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--243--4191Chr07:1754038..1754062 (25 bp)
CCCGGTATGCGCCTCGTCATGCAGT
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--926--4251Chr07:1754039..1754063 (25 bp)
CCGGTATGCGCCTCGTCATGCAGTA
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--424--3971Chr07:1754040..1754064 (25 bp)
CGGTATGCGCCTCGTCATGCAGTAC
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--251--1231Chr07:1754090..1754114 (25 bp)
AGTTCTCGCCGGATTATCTCTGCAT
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--636--451Chr07:1754105..1754129 (25 bp)
ATCTCTGCATCAAAGACGTCGACCA
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--924--5751Chr07:1754119..1754143 (25 bp)
GACGTCGACCAGGTCCAAGTTGGAG
LOC_Os07g04130
OsAffx.16075.1.S1_x_at--673--8031Chr07:1754140..1754164 (25 bp)
GGAGACTACTCTCCCTCGGTGGTCA
LOC_Os07g04130
Target Sequence 
GAGCTCACCAGGTTCGGCAAGGCCACCAAGGCCACCGACGTGTTCGCGTTCGGCGCCTTCGTCCTCGAGGTGGCGTGCGG
GCGCCGGCCGATGGGGCACAACGCCCGCGGCGAGCTGCTCGTGCTCGTCGAGTGGGTGCGCGACGCGTGGGCGGCGGGCG
GCGGCGGCTCCGTCGTCGACACCATGGACCCGAGGCTGGAGGAGTACTCCGGCGAGGAGGCGGAGCTGGTGCTCAAGCTC
GGGCTGCTCTGCTCGCACCCGCTCCCCGCCGCGAGGCCCGGTATGCGCCTCGTCATGCAGTACCTCGACGGCGACGTGCC
GCTGCCGGAGTTCTCGCCGGATTATCTCTGCATCAAAGACGTCGACCAGGTCCAAGTTGGAGACTACTCTCCCTCGGTGG
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16075.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis