Browse Element(s) Details


OsAffx.16074.1.S1_at

Description tigr:9635.m00332
TID=OsAffx.16074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0406011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04110Os.55710.1.S1_at11/117+1741775..1744036Legume lectins beta domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16074.1.S1_at--1156--7991Chr07:1716398..1716422 (25 bp)
GGATGTGACAGCCACAACCGACGTC
LOC_Os07g04060
OsAffx.16074.1.S1_at--995--4351Chr07:1716354..1716378 (25 bp)
CCACCACCATCCTTGAGGTGAAGTA
LOC_Os07g04060
OsAffx.16074.1.S1_at--288--8871Chr07:1716341..1716365 (25 bp)
TGAGGTGAAGTATCCAAATCCAAGT
LOC_Os07g04060
OsAffx.16074.1.S1_at--889--4371Chr07:1716322..1716346 (25 bp)
CCAAGTACAACTGCAAGCTCAAGCT
LOC_Os07g04060
OsAffx.16074.1.S1_at--43--2491Chr07:1716286..1716310 (25 bp)
AACAGGGTTGTTGCCACTCACCTGT
LOC_Os07g04060
OsAffx.16074.1.S1_at--617--6231Chr07:1716208..1716232 (25 bp)
GATGGCTGGAGCAAGGACCTGTACA
LOC_Os07g04060
OsAffx.16074.1.S1_at--627--1871Chr07:1716126..1716150 (25 bp)
ACGAGAAGCTGGTCCGATTGCTCAG
LOC_Os07g04060
OsAffx.16074.1.S1_at--430--9671Chr07:1716105..1716129 (25 bp)
TCAGCGCAGGCTGCAGGCACAAGGT
LOC_Os07g04060
OsAffx.16074.1.S1_at--1045--2211Chr07:1716087..1716111 (25 bp)
ACAAGGTGTTAAGGAATGGCGCGCA
LOC_Os07g04060
OsAffx.16074.1.S1_at--478--6071Chr07:1715980..1716004 (25 bp)
GAGTTTTGGTCGGAGATCATCCTGT
LOC_Os07g04060
OsAffx.16074.1.S1_at--933--6031Chr07:1715968..1715992 (25 bp)
GAGATCATCCTGTACCTGGCGCCGT
LOC_Os07g04060
Target Sequence 
GGATGTGACAGCCACAACCGACGTCCTCCTGGTGTGCCACATCGCCACCACCATCCTTGAGGTGAAGTATCCAAATCCAA
GTACAACTGCAAGCTCAAGCTCTGACAGCAGCAACAGGGTTGTTGCCACTCACCTGTCAGGCTACTGCGCCTACCTGGTG
GCCTGCTGTCCCGAGCTGCTCCCCGACGACGATGGCTGGAGCAAGGACCTGTACAAGGCCGTCAAGGCAGACGCTCGCCG
TGCTCTCGCCGCCGGTCGTGCTCCACCGGAGTACGAGAAGCTGGTCCGATTGCTCAGCGCAGGCTGCAGGCACAAGGTGT
TAAGGAATGGCGCGCAGCTCGCGGAGCAACTGGTGGCGTTGGTCCAAAACCAACAGGAGGAGGAGGAGGAAGGGAATAAG
GCGTGGGGGGTTCTTGCGGAGTTTTGGTCGGAGATCATCCTGTACCTGGCGCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis