Browse Element(s) Details


OsAffx.22502.2.S1_at

Description tigr:9635.m00330
TID=OsAffx.22502.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0405011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22502.2.S1_at--668--6171Chr07:1714488..1714512 (25 bp)
GAGGAGGGCGGCTGTCTGCCGAGGA
LOC_Os07g04050
OsAffx.22502.2.S1_at--1147--2652Chr07:1714722..1714746 (25 bp)
AAGCGCTGCGGGTCGTCCCGTCATC
LOC_Os07g04050
OsAffx.22502.2.S1_at--155--7811Chr07:1714732..1714756 (25 bp)
GGTCGTCCCGTCATCCCGATGGCTG
LOC_Os07g04050
OsAffx.22502.2.S1_at--134--4191Chr07:1714738..1714762 (25 bp)
CCCGTCATCCCGATGGCTGGCGAGG
LOC_Os07g04050
OsAffx.22502.2.S1_at--763--4491Chr07:1714814..1714838 (25 bp)
GCCGGGCACCGCTCCGTGGCTGGAT
LOC_Os07g04050
OsAffx.22502.2.S1_at--136--991Chr07:1714863..1714887 (25 bp)
AGGAGGACACCGACAACCACTATGG
LOC_Os07g04050
OsAffx.22502.2.S1_at--723--951Chr07:1714866..1714890 (25 bp)
AGGACACCGACAACCACTATGGCAA
LOC_Os07g04050
OsAffx.22502.2.S1_at--538--5631Chr07:1714868..1714892 (25 bp)
GACACCGACAACCACTATGGCAACG
LOC_Os07g04050
OsAffx.22502.2.S1_at--670--5611Chr07:1714874..1714898 (25 bp)
GACAACCACTATGGCAACGCCGACG
LOC_Os07g04050
OsAffx.22502.2.S1_at--765--1992Chr07:1714985..1715009 (25 bp)
ACTCCCCTGCCGCAAAGAGAAGTAA
LOC_Os07g04050
OsAffx.22502.2.S1_at--44--9313Chr07:1714987..1715011 (25 bp)
TCCCCTGCCGCAAAGAGAAGTAAAA
LOC_Os07g04050
Target Sequence 
GAGGAGGGCGGCTGTCTGCCGAGGAGAAGGCCGATGTCGGGGCCACCGCCACGGCAGTCCGCTCCATCGACGGGCGCACG
GCCATCGCCGCGGCGTCGGGCGGGGTAGCGGCCATGGGCAACCCCACCGCCGCCCCTTCCGCCACCCCGTCCTCCAGGGG
CCTGCTGCTGGGGCGGCCGGCGAGGCCGACGCGGAGCTCGTGGCCGCGCAGGAGGTGGCCGTGGAGGTTGCGGCAAGCGC
TGCGGGTCGTCCCGTCATCCCGATGGCTGGCGAGGGAGGGAGAAGCGGGGCACACCGTCGATGTGGTGGCGGCGGAGGAG
GAGGACGCCGGGCACCGCTCCGTGGCTGGATCCGGCCGCGGAGGAGGAGGAGACGAGGAGGACACCGACAACCACTATGG
CAACGCCGACGACCACCATGCTCACCAGCCGCCGCGCGCTCGCACGCCGCCTCCGCCGCCCGCCGCTCAGCCCTGCTCGC
CGCCGCCCGTTCTTGCTACTCCCCTGCCGCAAAGAGAAGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22502.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis