Browse Element(s) Details


OsAffx.28256.1.S1_at

Description tigr:9635.m00326
TID=OsAffx.28256.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0401011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28256.1.S1_at--326--1091Chr07:1691607..1691631 (25 bp)
AGGGCCTCTGTTCTCACCGATGTGT
LOC_Os07g04010
OsAffx.28256.1.S1_at--325--8271Chr07:1691574..1691598 (25 bp)
GGCATGTTCCTTCTTGAGGTGACAT
LOC_Os07g04010
OsAffx.28256.1.S1_at--775--5171Chr07:1691518..1691542 (25 bp)
GCAAGATTGCCCTATCATGTTGGTT
LOC_Os07g04010
OsAffx.28256.1.S1_at--1008--3511Chr07:1691503..1691527 (25 bp)
CATGTTGGTTGATTTGGTGCTTCTA
LOC_Os07g04010
OsAffx.28256.1.S1_at--673--8611Chr07:1691489..1691513 (25 bp)
TGGTGCTTCTACATTGGCGCAATGA
LOC_Os07g04010
OsAffx.28256.1.S1_at--103--5251Chr07:1691466..1691490 (25 bp)
GAATCACTTATTGATGTCGTCGACA
LOC_Os07g04010
OsAffx.28256.1.S1_at--624--9091Chr07:1691379..1691403 (25 bp)
TGCTCACATTCCTTGCCTAGTGCAA
LOC_Os07g04010
OsAffx.28256.1.S1_at--425--2851Chr07:1691339..1691363 (25 bp)
AAGTCATGCAATTCTTGGATGGCGA
LOC_Os07g04010
OsAffx.28256.1.S1_at--418--8011Chr07:1691323..1691347 (25 bp)
GGATGGCGATATATCATTCCCAGAT
LOC_Os07g04010
OsAffx.28256.1.S1_at--1129--8871Chr07:1691299..1691323 (25 bp)
TGAGGTATTGGCACAACTCCTAAGC
LOC_Os07g04010
OsAffx.28256.1.S1_at--651--5011Chr07:1691266..1691290 (25 bp)
GCAGGAGCATATCATCGTGTCTTCT
LOC_Os07g04010
Target Sequence 
AGGGCCTCTGTTCTCACCGATGTGTTTGCATTTGGCATGTTCCTTCTTGAGGTGACATGTGGACGAAGACCCATTATGCA
AAGTGAAGAGCAAGATTGCCCTATCATGTTGGTTGATTTGGTGCTTCTACATTGGCGCAATGAATCACTTATTGATGTCG
TCGACAAGAGGCTTCAAAATGAATACAATATTGATGAGGCATGCCTAGCACTAAAGCTAGGGCTGCTATGCTCACATTCC
TTGCCTAGTGCAAGGCCCAACATGAGGCAAGTCATGCAATTCTTGGATGGCGATATATCATTCCCAGATGAGGTATTGGC
ACAACTCCTAAGCCATGAAGGGCAGGAGCATATCATCGTGTCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis