Browse Element(s) Details


Os.37089.1.S1_at

Description gb:AK060877.1
DB_XREF= gi:32970895
TID=Os.37089.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-type protein kinase LRK1 (OJ1606_D04.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A05, full insert sequence.
FL= gb:AK060877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0404011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed
LOC_Os07g04050OsAffx.22502.2.S1_at11/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.5967.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050OsAffx.22502.1.S1_x_at3/117+1714160..1715080hypothetical protein
LOC_Os07g04050Os.53420.1.S1_x_at2/117+1714160..1715080hypothetical protein
LOC_Os07g04060OsAffx.16074.1.S1_at11/117+1715822..1718290expressed protein
LOC_Os07g04070OsAffx.5199.1.S1_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04070OsAffx.5199.1.S1_x_at11/117+1721014..1721718hypothetical protein
LOC_Os07g04080NANA7+1731491..1734283retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04090NANA7+1734593..1736056retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g04100Os.27691.1.S1_x_at1/117+1736306..1737250retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37089.1.S1_at--128--10611Chr07:1712199..1712223 (25 bp)
TTCTGGCAGCGAGATCTGATCCTGT
LOC_Os07g04040
Os.37089.1.S1_at--669--5911Chr07:1712271..1712295 (25 bp)
GAGCTAGTGCTCAAGCTTGGGCTTC
LOC_Os07g04040
Os.37089.1.S1_at--1042--211Chr07:1712350..1712374 (25 bp)
ATTTGTGCGGCGATGTGCTGTTACC
LOC_Os07g04040
Os.37089.1.S1_at--1080--6431Chr07:1712433..1712457 (25 bp)
GATCAGCTTGATGAGAATCCCTTAT
LOC_Os07g04040
Os.37089.1.S1_at--807--5651Chr07:1712461..1712485 (25 bp)
GACAGTATCTGTCGGTGCAAACGAG
LOC_Os07g04040
Os.37089.1.S1_at--1027--2371Chr07:1712479..1712503 (25 bp)
AAACGAGTATAACCGGTCTCTCTGG
LOC_Os07g04040
Os.37089.1.S1_at--680--211Chr07:1712606..1712630 (25 bp)
ATTTGAGCCAGAGCAGACCCGAACA
LOC_Os07g04040
Os.37089.1.S1_at--9--2471Chr07:1712649..1712673 (25 bp)
AACACACGGGAAGATCGGCCTCGAT
LOC_Os07g04040
Os.37089.1.S1_at--789--4111Chr07:1712726..1712750 (25 bp)
CGCTTTATTTGTGCGTGTAACTACT
LOC_Os07g04040
Os.37089.1.S1_at--314--5431Chr07:1712743..1712767 (25 bp)
TAACTACTTTTATACCGAGCAGGAC
LOC_Os07g04040
Os.37089.1.S1_at--110--3111Chr07:1712770..1712794 (25 bp)
AATATGCTAGCCAGTCCGAATTCCA
LOC_Os07g04040
Target Sequence 
TTCTGGCAGCGAGATCTGATCCTGTGCATGTTGGATACCAGGTTGGGAGGAGAGTTTGTGACGGAGGAGGCAGAGCTAGT
GCTCAAGCTTGGGCTTCTCTGCTCGCACCCGTCGCCAGCTTCAAGGCCAAGCATGAGGCTTGTGATGCAATATTTGTGCG
GCGATGTGCTGTTACCGGCGATGCCGGAGAGTTACCGGAGCATCCGGAGTTTCAGTGAGATGCAGGTTGAAGGTGATCAG
CTTGATGAGAATCCCTTATTAAGACAGTATCTGTCGGTGCAAACGAGTATAACCGGTCTCTCTGGTGGGAGATGATACTG
TCAAGTGTCAACAACTAGAGTTTAATTAGCCGATACCAAGGAGAAGAGAAATCTTGATATGGATTAAATTAAGAAGAGAT
TTAGGTAATTTGAGCCAGAGCAGACCCGAACAGAGGTTTTTAGTTCAGTGAACACACGGGAAGATCGGCCTCGATATATA
TATTTTGTGATTTTATTATTTTGCGGTTTCATTTAGACTTAAAGATACGCTTTATTTGTGCGTGTAACTACTTTTATACC
GAGCAGGACACAATATGCTAGCCAGTCCGAATTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis