Browse Element(s) Details


OsAffx.28255.1.S1_at

Description tigr:9635.m00325
TID=OsAffx.28255.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0400011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA
LOC_Os07g04040Os.37089.1.S1_at11/117+1710501..1712797Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28255.1.S1_at--185--5791Chr07:1686116..1686140 (25 bp)
GACGAAGAGATGAATGCCCGCTTAG
LOC_Os07g04000
OsAffx.28255.1.S1_at--1086--6411Chr07:1686065..1686089 (25 bp)
GATCATGGCACCGACATGCAAACCA
LOC_Os07g04000
OsAffx.28255.1.S1_at--327--10691Chr07:1686013..1686037 (25 bp)
TTGCCCCTGAGCTGGCAAACACAGG
LOC_Os07g04000
OsAffx.28255.1.S1_at--264--3091Chr07:1685998..1686022 (25 bp)
CAAACACAGGTAAGGCTTCACCCGC
LOC_Os07g04000
OsAffx.28255.1.S1_at--95--8791Chr07:1685967..1685991 (25 bp)
TGTTTTCTCCTTCGGCATATTTGTT
LOC_Os07g04000
OsAffx.28255.1.S1_at--205--5291Chr07:1685923..1685947 (25 bp)
GAAGGCCCATTGAGCACGGAATGAA
LOC_Os07g04000
OsAffx.28255.1.S1_at--694--31Chr07:1685872..1685896 (25 bp)
ATTGGGTGATTGATCGTTGGCACGA
LOC_Os07g04000
OsAffx.28255.1.S1_at--617--9671Chr07:1685747..1685771 (25 bp)
TCACCTATTGCAAGGCCAACCATGT
LOC_Os07g04000
OsAffx.28255.1.S1_at--776--852Chr07:1685675..1685699 (25 bp)
ATGGCGATGGACATGGTGCGAAACC
LOC_Os07g04000
OsAffx.28255.1.S1_at--686--7111Chr07:1685660..1685684 (25 bp)
GTGCGAAACCAATGGGTGGACTCAC
LOC_Os07g04000
OsAffx.28255.1.S1_at--582--7731Chr07:1685646..1685670 (25 bp)
GGTGGACTCACCTATTGAATATTGC
LOC_Os07g04000
Target Sequence 
GACGAAGAGATGAATGCCCGCTTAGGTGATTTTGGCCTTGCAAGGTTATATGATCATGGCACCGACATGCAAACCACACA
CCTGGTTGGCACCATAGGGTATCTTGCCCCTGAGCTGGCAAACACAGGTAAGGCTTCACCCGCCACCGATGTTTTCTCCT
TCGGCATATTTGTTCTTGAGGTTGCTTGTGGACGAAGGCCCATTGAGCACGGAATGAATAGTGAGTACAAGTTCACGTTG
GTAGATTGGGTGATTGATCGTTGGCACGAGGGATCACTTCTTGAGGTAATGGATCCAAAGCTCCAAAATGGATATGATGA
TGATGAGGCATGCCTAGCTCTAAAACTAGGATTGCTTTGCTCACACCCATCACCTATTGCAAGGCCAACCATGTGGCATG
TCATGCAGTATCTTAACCATGACTTGCCATTTCCAGAGTTGATGGCGATGGACATGGTGCGAAACCAATGGGTGGACTCA
CCTATTGAATATTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis