Browse Element(s) Details


OsAffx.5197.1.S1_at

Description tigr:9635.m00320
TID=OsAffx.5197.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0395011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5197.1.S1_at--29--3131Chr07:1664964..1664988 (25 bp)
AATTTTCATGGCCAACCAACTTTGA
LOC_Os07g03950
OsAffx.5197.1.S1_at--434--10171Chr07:1664917..1664941 (25 bp)
TATCAAAGACATTGCCTCGGGCCTG
LOC_Os07g03950
OsAffx.5197.1.S1_at--1106--971Chr07:1664800..1664824 (25 bp)
AGGAGATTTCGGTCTCTCACGACTA
LOC_Os07g03950
OsAffx.5197.1.S1_at--155--8671Chr07:1664775..1664799 (25 bp)
TGTGACCACGGCAGTAACCTACATA
LOC_Os07g03950
OsAffx.5197.1.S1_at--634--1591Chr07:1664719..1664743 (25 bp)
AGCTCCAGAGCTAGTTCACACAGGC
LOC_Os07g03950
OsAffx.5197.1.S1_at--1055--751Chr07:1664675..1664699 (25 bp)
ATGTCTTTGGTTTTGGCATCTTCCT
LOC_Os07g03950
OsAffx.5197.1.S1_at--878--7831Chr07:1664604..1664628 (25 bp)
GGTAAACATCTCATCTTGGTTGATT
LOC_Os07g03950
OsAffx.5197.1.S1_at--877--5291Chr07:1664531..1664555 (25 bp)
GAAGGCTCCAAGGTAACTACAATAT
LOC_Os07g03950
OsAffx.5197.1.S1_at--107--6331Chr07:1664505..1664529 (25 bp)
GATGAAGCCTACCTTGCACTGAAGC
LOC_Os07g03950
OsAffx.5197.1.S1_at--493--151Chr07:1664473..1664497 (25 bp)
ATTATGCTCACACCCATTTTCAAAC
LOC_Os07g03950
OsAffx.5197.1.S1_at--227--9011Chr07:1664423..1664447 (25 bp)
TGCAATACCTCGATGGCGATGCGCA
LOC_Os07g03950
Target Sequence 
AATTTTCATGGCCAACCAACTTTGAATTGGTCACAAAGGTTCAAAATTATCAAAGACATTGCCTCGGGCCTGCTCTACTT
ACATGAGGAGTGGGACAAAGTTGTAATTCATCGAGATGTCAAGGCAAGCAACGTGCTTATTGATAAGGAGATGAATGCAA
GATTAGGAGATTTCGGTCTCTCACGACTATGTGACCACGGCAGTAACCTACATACAACAAATGTTATCGGCACAATAGGA
TACTTAGCTCCAGAGCTAGTTCACACAGGCAAAGCAACTACACTTAGTGATGTCTTTGGTTTTGGCATCTTCCTTCTTGA
GGTTTCTTGCGGGCAAAAGCCTATCAGGCAAAACTCGGAAGGTAAACATCTCATCTTGGTTGATTGGGTGGTTGAGAATT
GGCATAAGGGATCACTTCTTGATACAATGGATAGAAGGCTCCAAGGTAACTACAATATCGATGAAGCCTACCTTGCACTG
AAGCTAGGATTATTATGCTCACACCCATTTTCAAACGCAAGGCCCAATATGCGGCAAGTTCTGCAATACCTCGATGGCGA
TGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5197.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis