Browse Element(s) Details


Os.45971.1.S1_at

Description gb:CB634389
DB_XREF= gi:29629380
DB_XREF=OSIIEb13O01.r
CLONE=OSIIEb13O01
TID=Os.45971.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.45971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-type protein kinase LRK1 (OJ1606_D04.18), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g039205/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45971.1.S1_at--516--9851Chr07:1638674..1638698 (25 bp)
TACAAAATGGTAAGGCTTCACCCCT
LOC_Os07g03920
Os.45971.1.S1_at--522--2951Chr07:1638669..1638693 (25 bp)
AATGGTAAGGCTTCACCCCTAACTG
LOC_Os07g03920
Os.45971.1.S1_at--724--911Chr07:1638662..1638686 (25 bp)
AGGCTTCACCCCTAACTGACGTGTT
LOC_Os07g03920
Os.45971.1.S1_at--536--6431Chr07:1638570..1638594 (25 bp)
GATCAGCTCAAATTAGTAGACTGGG
LOC_Os07g03920
Os.45971.1.S1_at--17--3131Chr07:1638560..1638584 (25 bp)
AATTAGTAGACTGGGTGATTGATTG
LOC_Os07g03920
Os.45971.1.S1_at--1151--2871NONE
AAGGGAGGTAGCATCCCCCTGGTGC
NONE
Os.45971.1.S1_at--271--7791NONE
GGTGCCATATATACACTTAAGTTTT
NONE
Os.45971.1.S1_at--400--3091NONE
AATTTTGAGGGATATTTCCTCCTAG
NONE
Os.45971.1.S1_at--371--7671NONE
GGGATATTTCCTCCTAGTAAAATGT
NONE
Os.45971.1.S1_at--763--3111NONE
AATTTAGTATGATGGGAAGGCCTCC
NONE
Os.45971.1.S1_at--719--6911NONE
GTATGATGGGAAGGCCTCCAAAACA
NONE
Target Sequence 
TACAAAATGGTAAGGCTTCACCCCTAACTGACGTGTTCGCCTTTGGCATATTTGTTNTTNGAGGTTNCTTGNGGNNGAAG
ACCCATTGAACACAAGATGAATAGNGATCAGCTCAAATTAGTAGACTGGGTGATTGATTGTTGGAANGAGAGATCACTTC
TTGAGGCAANGGATCCAAAGCTCCAAAATGAGTATGATGCTGATGAAGCATNCCTAGCTTTGAAACTAGGATTGCTTTGC
TCACACCAATCACCTGCTGCAAGGCCAAGCATGTGGCATGTCATGCAGTATNTTAACCATGACTTGCCATTTCCNGAGTT
GGCGCCAATGGACATGGTGCAGAANCGTCAGGTGGNCTCACCCGTTNCATATTGCCAATCAGTGGTGAGNGATGGCACCA
TCNNTGGCCTNTCCGAAGGGAGGTAGCATCCCCCTGGTGCCATATATACACTTAAGTTTTAGTTTTTTTAATTTTGAGGG
ATATTTCCTCCTAGTAAAATGTTATACATGTATAATTTAGTATGATGGGAAGGCCTCCAAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis