Browse Element(s) Details


OsAffx.5196.1.S1_at

Description tigr:9635.m00315
TID=OsAffx.5196.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0390011/11Lectin receptor-type protein kinase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03930OsAffx.22504.1.S1_at11/117+1645313..1647256Protein kinase domain containing protein, expressed
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5196.1.S1_at--1051--2971Chr07:1630092..1630116 (25 bp)
AATGTGCTTCTCGACAAACAACTGA
LOC_Os07g03900
OsAffx.5196.1.S1_at--944--8531Chr07:1630066..1630090 (25 bp)
TGGACGACTGGGAGATTTCGGTCTT
LOC_Os07g03900
OsAffx.5196.1.S1_at--990--2631Chr07:1629946..1629970 (25 bp)
AACCACTCTTACTGATGTCTTCTCA
LOC_Os07g03900
OsAffx.5196.1.S1_at--451--8191Chr07:1629874..1629898 (25 bp)
GGAAGACTCACAAGGCAGACAACTT
LOC_Os07g03900
OsAffx.5196.1.S1_at--942--2351Chr07:1629742..1629766 (25 bp)
AAAGCTGGGATTGATGTGTTCGCAC
LOC_Os07g03900
OsAffx.5196.1.S1_at--716--10591Chr07:1629724..1629748 (25 bp)
TTCGCACCCATTTCCTAATGTTAGG
LOC_Os07g03900
OsAffx.5196.1.S1_at--320--6791Chr07:1629705..1629729 (25 bp)
GTTAGGCCCAATGTGCGACAAGTTA
LOC_Os07g03900
OsAffx.5196.1.S1_at--328--11Chr07:1629658..1629682 (25 bp)
GCCACTACCAGAGCTTAAACCGGAG
LOC_Os07g03900
OsAffx.5196.1.S1_at--445--9831Chr07:1629643..1629667 (25 bp)
TAAACCGGAGCACTTCAGCTTTGAC
LOC_Os07g03900
OsAffx.5196.1.S1_at--337--671Chr07:1629593..1629617 (25 bp)
ATGAAGGTTACGACCCATCTGCTAT
LOC_Os07g03900
OsAffx.5196.1.S1_at--482--4871Chr07:1629573..1629597 (25 bp)
GCTATGTCTTTGTATCCATCTCCAA
LOC_Os07g03900
Target Sequence 
AATGTGCTTCTCGACAAACAACTGAATGGACGACTGGGAGATTTCGGTCTTGCAAGATTATATGACCATGGAACTGACCC
ACAAACCACACATGTTGTTGGCACGATAGGATACCTAGCTCCAGAGCTAGTACACAGAGGAAAGGCAACCACTCTTACTG
ATGTCTTCTCATTTGGCATATTTATTCTTGAGGTTACTTGTGGGCAAAAGCCTATCAAGGAAGACTCACAAGGCAGACAA
CTTATCTTGGTTGATTGGGTGCTTCAGAACTGGCACAAAGGATCACTTCTTGATACAATGGATATCAAGATCCAAGGTAA
CTATGATATAGGAGAAGCATGTCTTGTACTAAAGCTGGGATTGATGTGTTCGCACCCATTTCCTAATGTTAGGCCCAATG
TGCGACAAGTTATGCAATATCTCGATGGGGATGTGCCACTACCAGAGCTTAAACCGGAGCACTTCAGCTTTGACATGTTA
GCATTGATACAAAAGCAAAATGAAGGTTACGACCCATCTGCTATGTCTTTGTATCCATCTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5196.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis