Browse Element(s) Details


OsAffx.16071.1.S1_at

Description tigr:9635.m00313
TID=OsAffx.16071.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0388011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative
LOC_Os07g03910NANA7+1635181..1636717Hexose carrier protein HEX6, putative
LOC_Os07g03920Os.45971.1.S1_x_at8/117+1638182..1641552lectin receptor kinase 7, putative, expressed
LOC_Os07g03920Os.45971.1.S1_at5/117+1638182..1641552lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16071.1.S1_at--1030--8491Chr07:1617302..1617326 (25 bp)
TGGCACTGACCTACAAACTACACAC
LOC_Os07g03880
OsAffx.16071.1.S1_at--486--7851Chr07:1617261..1617285 (25 bp)
GGTACCTCGCCCCAGAATTGGTATG
LOC_Os07g03880
OsAffx.16071.1.S1_at--1077--9671Chr07:1617177..1617201 (25 bp)
TCACCTGCGGGCAAAGGCCAGTTAA
LOC_Os07g03880
OsAffx.16071.1.S1_at--1005--8411Chr07:1617162..1617186 (25 bp)
GGCCAGTTAACCACAGTTCACAAGA
LOC_Os07g03880
OsAffx.16071.1.S1_at--750--6751Chr07:1617147..1617171 (25 bp)
GTTCACAAGACAGTCCTGGTGTATT
LOC_Os07g03880
OsAffx.16071.1.S1_at--324--5191Chr07:1617067..1617091 (25 bp)
GCAAGGCTGCAAGGCGACTACAACA
LOC_Os07g03880
OsAffx.16071.1.S1_at--514--2831Chr07:1617019..1617043 (25 bp)
AAGTTAGGTCTATTATGCTCACATC
LOC_Os07g03880
OsAffx.16071.1.S1_at--350--9091Chr07:1617004..1617028 (25 bp)
TGCTCACATCCATTTACCAACATGA
LOC_Os07g03880
OsAffx.16071.1.S1_at--954--691Chr07:1616983..1617007 (25 bp)
ATGAGGCCCAATATGCAGCAAGTCA
LOC_Os07g03880
OsAffx.16071.1.S1_at--745--811Chr07:1616946..1616970 (25 bp)
ATGGTGATGTGCCACTCCCTGAGCT
LOC_Os07g03880
OsAffx.16071.1.S1_at--679--7891Chr07:1616871..1616895 (25 bp)
GGTTCAACCCATATACACTATCATC
LOC_Os07g03880
Target Sequence 
TGGCACTGACCTACAAACTACACACGTGGTCGGTACAATGGGGTACCTCGCCCCAGAATTGGTATGCACAGGTAAGGCAT
CCCCTCTCACAGATGTGTTTGCCTTTGGTGCATTCCTTCTTGAGGTCACCTGCGGGCAAAGGCCAGTTAACCACAGTTCA
CAAGACAGTCCTGGTGTATTAGTTGATTGGGTACTCGAGCATTGGCAAAAAGGATTGCTAACAAATACAGTAGATGCAAG
GCTGCAAGGCGACTACAACATTGATGAAGCATGCTTTGTGCTAAAGTTAGGTCTATTATGCTCACATCCATTTACCAACA
TGAGGCCCAATATGCAGCAAGTCATGCAATACCTTGATGGTGATGTGCCACTCCCTGAGCTAACACAAATGGATATGAGC
TTCAGCATCATCTCCATGATGCAAGATGAAGGGTTCAACCCATATACACTATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis