Browse Element(s) Details


Os.46721.1.S1_x_at

Description gb:NM_194918.1
DB_XREF= gi:37531195
TID=Os.46721.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46721 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase (OSJNBa0034B05.26), mRNA.
PROD=putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0658011/11Protein kinase domain containing protein, expressed
LOC_Os10g065105/11Protein kinase domain containing protein, expressed
LOC_Os10g068002/11Protein kinase domain containing protein
LOC_Os10g065602/11Protein kinase domain containing protein
LOC_Os10g067802/11Protein kinase domain containing protein
LOC_Os07g038201/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06550Os.45173.1.S1_x_at2/1110+3347096..3354143retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06560OsAffx.30320.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06560Os.46721.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06570OsAffx.30316.1.S1_at11/1110+3371345..3372441hypothetical protein
LOC_Os10g06580Os.46721.1.S1_x_at11/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.2.S1_x_at2/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.1.S1_x_at1/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06600OsAffx.30317.1.S1_at11/1110+3381947..3382384hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46721.1.S1_x_at--675--1632Chr10:3326262..3326286 (25 bp)
AGCCTCCGGGATGAGTTCCCCAGGG
LOC_Os10g06510
Os.46721.1.S1_x_at--148--3973Chr10:3326293..3326317 (25 bp)
CGGAGGACATCGTCCGCGCCATGAT
LOC_Os10g06510
Os.46721.1.S1_x_at--374--4531Chr10:3378582..3378606 (25 bp)
GCCGCCAAGAAGATGCATGCCTCGC
LOC_Os10g06580
Os.46721.1.S1_x_at--588--4572Chr10:3378559..3378583 (25 bp)
GCGCGTCATCCATCGAGACATCAAG
LOC_Os10g06580
Os.46721.1.S1_x_at--522--4493Chr10:3326381..3326405 (25 bp)
GCCGGAGAACATCCTTGTCAGCTTC
LOC_Os10g06510
Os.46721.1.S1_x_at--530--5891Chr10:3378504..3378528 (25 bp)
GAGCTCAAGATCTGTGACTTCGGCG
LOC_Os10g06580
Os.46721.1.S1_x_at--76--4611Chr10:3378305..3378329 (25 bp)
GCGACATGACGGAGAAAGAGCTGCT
LOC_Os10g06580
Os.46721.1.S1_x_at--88--8331Chr10:3378272..3378296 (25 bp)
TGTCCACCAACCTAGGTGACCAGCT
LOC_Os10g06580
Os.46721.1.S1_x_at--658--3251Chr10:3378265..3378289 (25 bp)
CAACCTAGGTGACCAGCTCAACGAG
LOC_Os10g06580
Os.46721.1.S1_x_at--543--3254Chr10:3522858..3522882 (25 bp)
CAACGAGCTCTTCTATGATGTCCTG
LOC_Os10g06800
Os.46721.1.S1_x_at--164--9574Chr10:3522866..3522890 (25 bp)
TCTTCTATGATGTCCTGCCGGAGCT
LOC_Os10g06800
Target Sequence 
AGCCTCCGGGATGAGTTCCCCAGGGCCCGCCCGGAGGACATCGTCCGCGCCATGATGCGGCCGCTCGTCGACGCCGCCAA
GAAGATGCATGCCTCGCGCGTCATCCATCGAGACATCAAGCCGGAGAACATCCTTGTCAGCTTCTCCGGGGAGCTCAAGA
TCTGTGACTTCGGCGCCGCCACGCTGATGAAGCCCGCCGGNAAGCCGTACGACCTGTGCCGCCCCGGCNNGCTGCCGTAC
ACCTCGCCAGAGCAGCTCGCCGGCAACCGATGCTACGGCCCCGCGGTGGACATGTGGGCGTTGGGGTGCATCATGGGCGA
GCTCCTCACCGGCGCGCCACTGTTCGGAGGCGACATGACGGAGAAAGAGCTGCTCGCCGACCTGTCCACCAACCTAGGTG
ACCAGCTCAACGAGCTCTTCTATGATGTCCTGCCGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46721.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis