Browse Element(s) Details


OsAffx.30320.1.S1_x_at

Description tigr:9638.m00611
TID=OsAffx.30320.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0695011/11Protein kinase domain containing protein
LOC_Os10g0680011/11Protein kinase domain containing protein
LOC_Os10g067806/11Protein kinase domain containing protein
LOC_Os10g065602/11Protein kinase domain containing protein
LOC_Os10g065801/11Protein kinase domain containing protein, expressed
LOC_Os02g290801/11hypothetical protein
LOC_Os10g065101/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.1.S1_x_at11/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.2.S1_x_at4/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06960OsAffx.18160.1.S1_at11/1110+3612092..3612604hypothetical protein
LOC_Os10g06970NANA10+3613546..3613767hypothetical protein
LOC_Os10g06980Os.26886.3.S1_x_at4/1110+3619701..3621043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06990Os.26886.1.S1_x_at4/1110+3621224..3624918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07000Os.26886.2.S1_s_at5/1110+3625219..3625891hypothetical protein
LOC_Os10g07000Os.26886.6.S1_s_at4/1110+3625219..3625891hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30320.1.S1_x_at--179--8433Chr10:3522482..3522506 (25 bp)
GGCCGGAGAAGCAAGTCCGCTTCAT
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--603--2733Chr10:3522490..3522514 (25 bp)
AAGCAAGTCCGCTTCATGATGCGGC
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--924--2853Chr10:3522494..3522518 (25 bp)
AAGTCCGCTTCATGATGCGGCAGCT
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--99--10552Chr10:3522502..3522526 (25 bp)
TTCATGATGCGGCAGCTCATCGGCG
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--375--4535Chr10:3522526..3522550 (25 bp)
GCCGCCAAGAAGATGCACGCCTCGC
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--585--3952Chr10:3522575..3522599 (25 bp)
CGGAGAACATCCTCAACAGCTTCGG
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--625--1433Chr10:3522578..3522602 (25 bp)
AGAACATCCTCAACAGCTTCGGCGA
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--904--5632Chr10:3522616..3522640 (25 bp)
GACTTCGGCTCAGCGACGTTCGTCA
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--306--10612Chr10:3522619..3522643 (25 bp)
TTCGGCTCAGCGACGTTCGTCAACC
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--976--8212Chr10:3522712..3522736 (25 bp)
GGCAACCACTGCTACGGCCCGGGCG
LOC_Os10g06800
OsAffx.30320.1.S1_x_at--553--4156Chr10:3522785..3522809 (25 bp)
CGCCGCTGTTCGGAGGCGACATGAC
LOC_Os10g06800
Target Sequence 
GGCCGGAGAAGCAAGTCCGCTTCATGATGCGGCAGCTCATCGGCGCCGCCAAGAAGATGCACGCCTCGCACGTCATCCAC
CGGGACATCAAGCCGGAGAACATCCTCAACAGCTTCGGCGACCTCAAGGTNTGNGACTTCGGCTCAGCGACGTTCGTCAA
CCCCGCCGGGAAGCCATACNAGGAGTGTTTGGTNGGCACCTTGCCCTACACCTCGCCGGAGCAGCTCGCCGGCAACCACT
GCTACGGCCCGGGCGTCGACATNTGGGCGNTGGGNTGCATCATGGGCGAGCTNCTCACCGGCGCGCCGCTGTTCGGAGGC
GACATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30320.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis