Browse Element(s) Details


OsAffx.18160.1.S1_at

Description tigr:9638.m00612
TID=OsAffx.18160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0696011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.1.S1_x_at11/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.2.S1_x_at4/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06960OsAffx.18160.1.S1_at11/1110+3612092..3612604hypothetical protein
LOC_Os10g06970NANA10+3613546..3613767hypothetical protein
LOC_Os10g06980Os.26886.3.S1_x_at4/1110+3619701..3621043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06990Os.26886.1.S1_x_at4/1110+3621224..3624918transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g07000Os.26886.2.S1_s_at5/1110+3625219..3625891hypothetical protein
LOC_Os10g07000Os.26886.6.S1_s_at4/1110+3625219..3625891hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18160.1.S1_at--1079--3811Chr10:3612123..3612147 (25 bp)
CTGCCATGCCAGAAGAGGAACCGAA
LOC_Os10g06960
OsAffx.18160.1.S1_at--833--4411Chr10:3612130..3612154 (25 bp)
GCCAGAAGAGGAACCGAAACATGAA
LOC_Os10g06960
OsAffx.18160.1.S1_at--596--1151Chr10:3612177..3612201 (25 bp)
AGTCTTCCATGTTTCTGACGAGAAC
LOC_Os10g06960
OsAffx.18160.1.S1_at--55--8771Chr10:3612186..3612210 (25 bp)
TGTTTCTGACGAGAACTGAGGCGGA
LOC_Os10g06960
OsAffx.18160.1.S1_at--1043--1431Chr10:3612197..3612221 (25 bp)
AGAACTGAGGCGGAGGCATCTCCAC
LOC_Os10g06960
OsAffx.18160.1.S1_at--784--8011Chr10:3612208..3612232 (25 bp)
GGAGGCATCTCCACCAAGAATCGTC
LOC_Os10g06960
OsAffx.18160.1.S1_at--1150--451Chr10:3612214..3612238 (25 bp)
ATCTCCACCAAGAATCGTCGGGCTT
LOC_Os10g06960
OsAffx.18160.1.S1_at--56--3371Chr10:3612219..3612243 (25 bp)
CACCAAGAATCGTCGGGCTTCGCGG
LOC_Os10g06960
OsAffx.18160.1.S1_at--746--5931Chr10:3612316..3612340 (25 bp)
GAGCAGCAGAAAACACCTAGGAGGA
LOC_Os10g06960
OsAffx.18160.1.S1_at--832--7471Chr10:3612432..3612456 (25 bp)
GGACCGACGAAGAGACCAACCCGCG
LOC_Os10g06960
OsAffx.18160.1.S1_at--654--771Chr10:3612527..3612551 (25 bp)
ATGTGCGCAGCCGAGGAGACCTCCG
LOC_Os10g06960
Target Sequence 
CTGCCATGCCAGAAGAGGAACCGAAACATGAAGACAGGGCAGCAGAGACAACGGAGTCTTCCATGTTTCTGACGAGAACT
GAGGCGGAGGCATCTCCACCAAGAATCGTCGGGCTTCGCGGGAAACCACCCTTCACAACTACAACAACGACTTCCAACTT
CACCACCAACAAAGACAAGAGTTGGGGCAAGCAGAGCAGCAGAAAACACCTAGGAGGAAGGAAGGGAGGAAGGGAGGTGG
CAACCGCGATGGGGGTGGGGGGAGGGGGTGGACGTCGCCGACGCGCACCCTGCCGAAAGCCGCCCCACCGGACCGACGAA
GAGACCAACCCGCGCCGCTTCGCAAGCACCAGCCTTCTGCCCACGCGCGCTAGCCACCGCCGCGCGCGCCGGCCACGCCC
ACCGATGTGCGCAGCCGAGGAGACCTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis