Browse Element(s) Details


OsAffx.30324.1.S1_at

Description tigr:9638.m00609
TID=OsAffx.30324.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0693011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.1.S1_x_at11/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.2.S1_x_at4/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06960OsAffx.18160.1.S1_at11/1110+3612092..3612604hypothetical protein
LOC_Os10g06970NANA10+3613546..3613767hypothetical protein
LOC_Os10g06980Os.26886.3.S1_x_at4/1110+3619701..3621043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g06990Os.26886.1.S1_x_at4/1110+3621224..3624918transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000079biological_processregulation of cyclin dependent protein kinase activity
GO:0000086biological_processG2/M transition of mitotic cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0016572biological_processhistone phosphorylation
GO:0000307cellular_componentcyclin-dependent protein kinase holoenzyme complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30324.1.S1_at--1040--7791Chr10:3596820..3596844 (25 bp)
GGCCGTCCCTTCTCGGAGGCCGAGA
LOC_Os10g06930
OsAffx.30324.1.S1_at--852--9131Chr10:3596949..3596973 (25 bp)
TGCGTCCTCAAGTACTGCGACTTCG
LOC_Os10g06930
OsAffx.30324.1.S1_at--756--7811Chr10:3596987..3597011 (25 bp)
GGTCATGCCGCCGTATGAGGAATTC
LOC_Os10g06930
OsAffx.30324.1.S1_at--295--691Chr10:3597001..3597025 (25 bp)
ATGAGGAATTCTTGGTCGGCACGCT
LOC_Os10g06930
OsAffx.30324.1.S1_at--1124--10531Chr10:3597009..3597033 (25 bp)
TTCTTGGTCGGCACGCTCCGGTTCA
LOC_Os10g06930
OsAffx.30324.1.S1_at--452--3751Chr10:3597117..3597141 (25 bp)
CTCACCGGCAGGTTCGTGTTCACCT
LOC_Os10g06930
OsAffx.30324.1.S1_at--1117--3951Chr10:3597145..3597169 (25 bp)
CGGAGACGTGTGAGGACCATGTCCT
LOC_Os10g06930
OsAffx.30324.1.S1_at--449--771Chr10:3597163..3597187 (25 bp)
ATGTCCTCGACCTGCTGGACCTGCG
LOC_Os10g06930
OsAffx.30324.1.S1_at--834--4711Chr10:3597176..3597200 (25 bp)
GCTGGACCTGCGAGAATGCGACGTC
LOC_Os10g06930
OsAffx.30324.1.S1_at--1037--3011Chr10:3597190..3597214 (25 bp)
AATGCGACGTCGGAGCCGAGGACTC
LOC_Os10g06930
OsAffx.30324.1.S1_at--484--8351Chr10:3597344..3597368 (25 bp)
GGCGGACTCGCCTGCCGTACTCAGG
LOC_Os10g06930
Target Sequence 
GGCCGTCCCTTCTCGGAGGCCGAGACCCGCGCCCTGATGCGGCAGCTCCTCGCTGGCGCCGCGGCGATCCACGGCGCCGG
CCTGATCCACCGCGACGTCAAGCCGGCAAACATCCTCGTCGGCCCGGGCTGCGTCCTCAAGTACTGCGACTTCGGCGACG
CCACGCCGGTCATGCCGCCGTATGAGGAATTCTTGGTCGGCACGCTCCGGTTCACCTCGCCGGAGGAGGTCGCCGGCGAC
CGGTTCTACGGCCAGGGCGTGGACATGTGGGCGCTGGGCTGCGTGATGGCCGAGCTCCTCACCGGCAGGTTCGTGTTCAC
CTCGTCGGAGACGTGTGAGGACCATGTCCTCGACCTGCTGGACCTGCGAGAATGCGACGTCGGAGCCGAGGACTCGCCGG
CGTTCGGTGGCCTGCCGGGGCTGTCGCCGGCGGGGCGCGAGGTGCTGGCTGGGCTGCTGGCGTTCGACCACCGGGAGAGG
ATGACGGCGGAGGCGGCGCTGGAGCACCGGTGGTTCACGGCGGCGGCGGACTCGCCTGCCGTACTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis