Browse Element(s) Details


OsAffx.30323.1.S1_at

Description tigr:9638.m00607
TID=OsAffx.30323.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0691010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06840NANA10+3555193..3558328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06860OsAffx.20725.1.S1_x_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860OsAffx.20725.1.S1_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860Os.46610.1.A1_x_at1/1110+3561389..3567199hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.1.S1_x_at11/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.2.S1_x_at4/1110+3604710..3605693Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009908biological_processflower development
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0016481biological_processnegative regulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30323.1.S1_at--673--571Chr10:3582889..3583202 (25 bp)
ATCCTTGTCTGAGCTGATGTCTGAC
LOC_Os10g06910
OsAffx.30323.1.S1_at--1120--7491Chr10:3583238..3583262 (25 bp)
GTGGTCGCAACCTAAGCGGTTCATC
LOC_Os10g06910
OsAffx.30323.1.S1_at--1135--5811Chr10:3583267..3583291 (25 bp)
GACCCGCAAGATTTGTATCGCCAGT
LOC_Os10g06910
OsAffx.30323.1.S1_at--927--1091Chr10:3583289..3583313 (25 bp)
AGTGGTAGTGGGTCCATCGCATCAC
LOC_Os10g06910
OsAffx.30323.1.S1_at--667--5951Chr10:3583316..3583340 (25 bp)
GAGCAACATTGATGCCAGTGTCCAG
LOC_Os10g06910
OsAffx.30323.1.S1_at--784--991NONE
AGGATCGCATCAACAGCCACTGGTC
NONE
OsAffx.30323.1.S1_at--429--3331Chr10:3584028..3584052 (25 bp)
CACTGGTCACTCTATGCTATCAACA
LOC_Os10g06910
OsAffx.30323.1.S1_at--265--6611Chr10:3584099..3584123 (25 bp)
GATTGGTACTCAGTTCAGCGATCAC
LOC_Os10g06910
OsAffx.30323.1.S1_at--249--6431Chr10:3584118..3584142 (25 bp)
GATCACCATCGGCATTTGTCAAAAC
LOC_Os10g06910
OsAffx.30323.1.S1_at--1155--2811Chr10:3584190..3584214 (25 bp)
AAGTTCTGTAGATTCGGCGGATTCC
LOC_Os10g06910
OsAffx.30323.1.S1_at--254--2591Chr10:3584256..3584280 (25 bp)
AACGATTGCGCATTCTACATCATGA
LOC_Os10g06910
Target Sequence 
ATCCTTGTCTGAGCTGATGTCTGACACCAATGTGGACATTGAAGGCGTAAAATCAACCCCGTGGTCGCAACCTAAGCGGT
TCATCTCCAGACCCGCAAGATTTGTATCGCCAGTGGTAGTGGGTCCATCGCATCACACGAGCAACATTGATGCCAGTGTC
CAGCTCAGGGATTTCATCATCAACAACCAGGATCGCATCAACAGCCACTGGTCACTCTATGCTATCAACATCCCACACAA
GCGGATTGACATAATGGATTCTAACAACTATCCAATGATTGGTACTCAGTTCAGCGATCACCATCGGCATTTGTCAAAAC
GGATTGTCAAAAGGTTGAGTGACGCACTCCAGACGGCCTTGCCAAAAAAGTTCTGTAGATTCGGCGGATTCCGGAAGACT
CCCATGCCGTGCGCCAAGATGGCTATTTGTTCTAACGATTGCGCATTCTACATCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis