Browse Element(s) Details


OsAffx.18159.1.S1_at

Description tigr:9638.m00608
TID=OsAffx.18159.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0692011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06860OsAffx.20725.1.S1_x_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860OsAffx.20725.1.S1_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860Os.46610.1.A1_x_at1/1110+3561389..3567199hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.1.S1_x_at11/1110+3604710..3605693Protein kinase domain containing protein
LOC_Os10g06950OsAffx.30320.2.S1_x_at4/1110+3604710..3605693Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18159.1.S1_at--332--2891Chr10:3585942..3585966 (25 bp)
AAGGGATCACGTCGATCCACCGAAA
LOC_Os10g06920
OsAffx.18159.1.S1_at--1074--5531Chr10:3586018..3586042 (25 bp)
GAAACATATGAGCTACCCGCGGAAT
LOC_Os10g06920
OsAffx.18159.1.S1_at--1049--6691Chr10:3586083..3586107 (25 bp)
GTTCCCGATTTCACCATCTATGGAA
LOC_Os10g06920
OsAffx.18159.1.S1_at--440--1271Chr10:3586131..3586155 (25 bp)
AGATCTTGGGTACATGTCGACCCCA
LOC_Os10g06920
OsAffx.18159.1.S1_at--699--9671Chr10:3586162..3586186 (25 bp)
TCACCACCTTCGGACGTCGATGATA
LOC_Os10g06920
OsAffx.18159.1.S1_at--169--7211Chr10:3586177..3586201 (25 bp)
GTCGATGATATGAACCCTCCGGAGA
LOC_Os10g06920
OsAffx.18159.1.S1_at--1076--9271Chr10:3586194..3586218 (25 bp)
TCCGGAGAGGCACCCAATCAATTAC
LOC_Os10g06920
OsAffx.18159.1.S1_at--860--231Chr10:3586223..3586247 (25 bp)
ATAGGAACCACCCAGCTTACGACGA
LOC_Os10g06920
OsAffx.18159.1.S1_at--484--5771Chr10:3586252..3586276 (25 bp)
GACGACTTTGAACTACTGAACGAGG
LOC_Os10g06920
OsAffx.18159.1.S1_at--819--7871Chr10:3586280..3586304 (25 bp)
GGTTATTCTTCAGAGATCACCAGAC
LOC_Os10g06920
OsAffx.18159.1.S1_at--272--9651Chr10:3586296..3586320 (25 bp)
TCACCAGACACCACCGAAGGATGTT
LOC_Os10g06920
Target Sequence 
AAGGGATCACGTCGATCCACCGAAACCATCCCTAACCCCAACTCCGACCACTCCTCCCCAGCGGGAGAACAACGAAGAAA
CATATGAGCTACCCGCGGAATTCCGCGTGACAAGCCCTCCTCCACCGTCGCCACCCTACCCGTTCCCGATTTCACCATCT
ATGGAAGAAGATGGCATGATTTTCGCGGAAGATCTTGGGTACATGTCGACCCCATGTCCCTCACCACCTTCGGACGTCGA
TGATATGAACCCTCCGGAGAGGCACCCAATCAATTACCCCAATAGGAACCACCCAGCTTACGACGACGACGACGACTTTG
AACTACTGAACGAGGATTGGTTATTCTTCAGAGATCACCAGACACCACCGAAGGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis