Browse Element(s) Details


OsAffx.20725.3.S1_x_at

Description gb:NM_194941.1
DB_XREF= gi:37531241
TID=OsAffx.20725.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative far-red impaired response protein (OSJNBa0004E08.22), mRNA.
PROD=putative far-red impaired response protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0689011/11hypothetical protein
LOC_Os11g190303/11hypothetical protein
LOC_Os03g418001/11transposon protein, putative, unclassified
LOC_Os06g325301/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06830OsAffx.22848.4.S1_at2/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06830OsAffx.22848.4.S1_x_at1/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06840NANA10+3555193..3558328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06860OsAffx.20725.1.S1_x_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860OsAffx.20725.1.S1_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860Os.46610.1.A1_x_at1/1110+3561389..3567199hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009585biological_processred, far-red light phototransduction
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20725.3.S1_x_at--91--1471Chr10:3571802..3571826 (25 bp)
AGAAGTGGGTGCCTCCATTCTTTAG
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--1033--7771Chr10:3571809..3571833 (25 bp)
GGTGCCTCCATTCTTTAGGAAGGAT
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--132--5393Chr11:10831912..10831936 (25 bp)
GAAGCACAAGTTTGTTGACCACCAA
LOC_Os11g19030
OsAffx.20725.3.S1_x_at--965--9032Chr11:10831944..10832418 (25 bp)
TGCACCGTTTTGCTCGGAGGATGTT
LOC_Os11g19030
OsAffx.20725.3.S1_x_at--160--10791Chr10:3572110..3572134 (25 bp)
TTGGCTGTACGGTGGCCATTTGTTA
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--369--731Chr10:3572140..3572164 (25 bp)
ATGTCTAGACTTTACACCAGGGCCG
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--703--2152Chr11:10832176..10832200 (25 bp)
ACACCAGGGCCGCTTTCAGATTGTT
LOC_Os11g19030
OsAffx.20725.3.S1_x_at--752--5771Chr10:3572221..3572245 (25 bp)
GACGACAATTTCTGCAACGGGTGGT
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--576--2571Chr10:3572236..3572260 (25 bp)
AACGGGTGGTTAGTGTCACACACGA
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--72--9731Chr10:3572297..3572321 (25 bp)
TCAAGCTTATCGCAGATGTGGACGC
LOC_Os10g06890
OsAffx.20725.3.S1_x_at--1112--8032Chr10:3572352..3572376 (25 bp)
GGAGCATACAGGTATTTTTACCGTA
LOC_Os10g06890
Target Sequence 
AGAAGTGGGTGCCTCCATTCTTTAGGAAGGATTATTGCGGGAGGATGATGTCGACGCAGCGAAGCGAGAGCATGAACAAG
TTGGTGAAGCACAAGTTTGTTGACCACCAAACTGCGCTGCACCGTTTTGCTCGGAGGATGTTGGAGGTTATAACTGACAG
GAAGGAGAAGGAGGCTGCTGAGACAAGAGCATGCTCGGGGAAGCTGGTGTTGGCTGTACGGTGGCCATTTGTTATACAGA
TGTCTAGACTTTACACCAGGGCCGCTTTCAGATTGTTTGAGGAGGCGCTTCAGGACAGCACCGACTTCAGGATCACACAA
GACGACAATTTCTGCAACGGGTGGTTAGTGTCACACACGAAACGGTCCGAAAAACACAACTGGTGTCAAAAGCAATTCAA
GCTTATCGCAGATGTGGACGCAGGGGTTTTTACATGCGAGTGCAAACAGTGGGAGCATACAGGTATTTTTACCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20725.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis