Browse Element(s) Details


OsAffx.18158.1.S1_at

Description tigr:9638.m00605
TID=OsAffx.18158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0689010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06830OsAffx.22848.4.S1_at2/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06830OsAffx.22848.4.S1_x_at1/1110+3547164..3551882retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06840NANA10+3555193..3558328retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06860OsAffx.20725.1.S1_x_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860OsAffx.20725.1.S1_at11/1110+3561389..3567199hypothetical protein
LOC_Os10g06860Os.46610.1.A1_x_at1/1110+3561389..3567199hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_x_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.3.S1_at11/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.18158.1.S1_at10/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.4.S1_x_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06890OsAffx.20725.5.S1_at1/1110+3571681..3573300hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06900OsAffx.6595.1.S1_x_at11/1110+3573922..3574179hypothetical protein
LOC_Os10g06910OsAffx.30323.1.S1_at10/1110+3579268..3584357hypothetical protein
LOC_Os10g06920OsAffx.18159.1.S1_at11/1110+3585910..3586362expressed protein
LOC_Os10g06930OsAffx.30324.1.S1_at11/1110+3596409..3597407Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
GO:0010017biological_processred or far red light signaling pathway
GO:0010018biological_processfar red light signaling pathway
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18158.1.S1_at--602--8631NONE
TGGGAGCATACAGGATGGGCATTAT
NONE
OsAffx.18158.1.S1_at--299--5231Chr10:3572997..3573021 (25 bp)
GAATACATGTCCGACAAACCCAGCA
LOC_Os10g06890
OsAffx.18158.1.S1_at--587--751Chr10:3573003..3573027 (25 bp)
ATGTCCGACAAACCCAGCAAATTTC
LOC_Os10g06890
OsAffx.18158.1.S1_at--1077--1311Chr10:3573097..3573121 (25 bp)
AGAGGACGCGGTACCAATGTTGGAT
LOC_Os10g06890
OsAffx.18158.1.S1_at--89--5811Chr10:3573101..3573125 (25 bp)
GACGCGGTACCAATGTTGGATGCAA
LOC_Os10g06890
OsAffx.18158.1.S1_at--154--1111Chr10:3573203..3573227 (25 bp)
AGTGGGCTGCATATGCGGCTGATTA
LOC_Os10g06890
OsAffx.18158.1.S1_at--849--251Chr10:3573213..3573237 (25 bp)
ATATGCGGCTGATTATGCTGCGTAC
LOC_Os10g06890
OsAffx.18158.1.S1_at--917--611Chr10:3573215..3573239 (25 bp)
ATGCGGCTGATTATGCTGCGTACAC
LOC_Os10g06890
OsAffx.18158.1.S1_at--987--8331Chr10:3573219..3573243 (25 bp)
GGCTGATTATGCTGCGTACACAGAT
LOC_Os10g06890
OsAffx.18158.1.S1_at--657--10131Chr10:3573226..3573250 (25 bp)
TATGCTGCGTACACAGATGACGATC
LOC_Os10g06890
OsAffx.18158.1.S1_at--360--4651Chr10:3573232..3573256 (25 bp)
GCGTACACAGATGACGATCTAACAA
LOC_Os10g06890
Target Sequence 
TGGGAGCATACAGGATGGGCATTATGCGAATACATGTCCGACAAACCCAGCAAATTTCGACAAGGTCATGAAGGCCACTA
ACAGGGGTAAGGGTAAGAGGGGCAGGCCACGAGGATCCAGCAGGGGTAGAGGACGCGGTACCAATGTTGGATGCAAAGTT
AGTACTGCAGTCCCTAGACCAACAAGGAGATCCACCAGGGAGGGTCCATCGCTGCGAAGATGTTTGGACGACGAGTGGGC
TGCATATGCGGCTGATTATGCTGCGTACACAGATGACGATCTAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis