Browse Element(s) Details


OsAffx.30316.1.S1_at

Description tigr:9638.m00573
TID=OsAffx.30316.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0657011/11hypothetical protein
LOC_Os02g238701/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06550Os.45173.1.S1_x_at2/1110+3347096..3354143retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06560OsAffx.30320.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06560Os.46721.1.S1_x_at2/1110+3361680..3362657Protein kinase domain containing protein
LOC_Os10g06570OsAffx.30316.1.S1_at11/1110+3371345..3372441hypothetical protein
LOC_Os10g06580Os.46721.1.S1_x_at11/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.2.S1_x_at2/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06580OsAffx.30320.1.S1_x_at1/1110+3378091..3379068Protein kinase domain containing protein, expressed
LOC_Os10g06600OsAffx.30317.1.S1_at11/1110+3381947..3382384hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30316.1.S1_at--115--3951Chr10:3371375..3371399 (25 bp)
CGGATCCGAAATCCTCACGTTTCTC
LOC_Os10g06570
OsAffx.30316.1.S1_at--460--531Chr10:3371378..3371402 (25 bp)
ATCCGAAATCCTCACGTTTCTCCGA
LOC_Os10g06570
OsAffx.30316.1.S1_at--474--5594Chr10:3371382..3371406 (25 bp)
GAAATCCTCACGTTTCTCCGATGGG
LOC_Os10g06570
OsAffx.30316.1.S1_at--257--1176Chr11:28459710..28459734 (25 bp)
AGTAATCAAACAAGCCGGTCCCATG
NONE
OsAffx.30316.1.S1_at--278--7076Chr11:28459711..28459735 (25 bp)
GTAATCAAACAAGCCGGTCCCATGA
NONE
OsAffx.30316.1.S1_at--33--9716Chr11:28459715..28459739 (25 bp)
TCAAACAAGCCGGTCCCATGATACG
NONE
OsAffx.30316.1.S1_at--1138--4958Chr11:28459814..28459838 (25 bp)
GCATCAGGGGAAACATACCTCCCAT
NONE
OsAffx.30316.1.S1_at--1058--7618Chr11:28459821..28459845 (25 bp)
GGGAAACATACCTCCCATCATCGCC
NONE
OsAffx.30316.1.S1_at--993--2837Chr11:28459859..28459883 (25 bp)
AAGTCAATCATATTTCATCAACCAT
NONE
OsAffx.30316.1.S1_at--1115--7077Chr11:28459861..28459885 (25 bp)
GTCAATCATATTTCATCAACCATTA
NONE
OsAffx.30316.1.S1_at--1105--95925Chr11:28459866..28459890 (25 bp)
TCATATTTCATCAACCATTATTTAA
NONE
Target Sequence 
CGGATCCGAAATCCTCACGTTTCTCCGATGGGNGTAAATGATCACNGTNGGTNNAGTAATCAAACAAGCCGGTCCCATGA
TACGNCATGTGTCCTTAACGACCCAGANGGAGNTANTGCATCAGGGGAAACATACCTCCCATCATCGCCCTACCACNCGT
NCAAGTCAATCATATTTCATCAACCATTATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis