Browse Element(s) Details


Os.11936.1.S1_at

Description gb:AK069319.1
DB_XREF= gi:32979343
TID=Os.11936.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11936 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (P0483E09.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023018L01, full insert sequence.
FL= gb:AK069319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0384011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11936.1.S1_at--645--2771Chr07:1601880..1601904 (25 bp)
AAGACCAATCATGCAAGTTCCAGAG
LOC_Os07g03840
Os.11936.1.S1_at--857--10671Chr07:1601863..1601887 (25 bp)
TTCCAGAGGGCGAACAACATGTGTT
LOC_Os07g03840
Os.11936.1.S1_at--368--1191Chr07:1601671..1601695 (25 bp)
AGTACCTAACTGGAGACATGGCAAT
LOC_Os07g03840
Os.11936.1.S1_at--240--8231Chr07:1601652..1601676 (25 bp)
GGCAATGCCAGAACTGGTGCCAACA
LOC_Os07g03840
Os.11936.1.S1_at--354--4891Chr07:1601620..1601644 (25 bp)
GCTTTCATACACTTGCACTGATGCA
LOC_Os07g03840
Os.11936.1.S1_at--345--5431Chr07:1601595..1601619 (25 bp)
GAACCAAGGATTCGACTCATACGTC
LOC_Os07g03840
Os.11936.1.S1_at--923--9591Chr07:1601579..1601603 (25 bp)
TCATACGTCATGTCATACCCTTCAT
LOC_Os07g03840
Os.11936.1.S1_at--965--9591Chr07:1601558..1601582 (25 bp)
TCATCAACGGCAAGCATGAGCGCCA
LOC_Os07g03840
Os.11936.1.S1_at--1116--7011Chr07:1601477..1601501 (25 bp)
GTAAATTTTGCATGCTTAGTCACTT
LOC_Os07g03840
Os.11936.1.S1_at--161--1271Chr07:1601452..1601476 (25 bp)
AGATACTCAAGTGTGGCCTCCATTT
LOC_Os07g03840
Os.11936.1.S1_at--736--7511Chr07:1601440..1601464 (25 bp)
GTGGCCTCCATTTTCAACTTTACTG
LOC_Os07g03840
Target Sequence 
AAGACCAATCATGCAAGTTCCAGAGGGCGAACAACATGTGTTGGTTGACTGGGTGCTCGAGCATTGGCACAAAGGATCAA
TAACTGAGATAGTGGATACAAAGCTCCATGGAAACTATAATGTAGATGAGGTATGTCTAGTACTAAAGCTTGGATTATTA
TGCTCACATCCTCTCTCCAATGCAAGGCCCAATATAAGGCAAGTGATGAAGTACCTAACTGGAGACATGGCAATGCCAGA
ACTGGTGCCAACACACCACAGCTTTCATACACTTGCACTGATGCAGAACCAAGGATTCGACTCATACGTCATGTCATACC
CTTCATCAACGGCAAGCATGAGCGCCATGTCCAACAACCTTTCAGCACAAAGATGAATTACAGTGTTAACATATTGTACT
TATGTAAATTTTGCATGCTTAGTCACTTAGATACTCAAGTGTGGCCTCCATTTTCAACTTTACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis