Browse Element(s) Details


OsAffx.28251.1.S1_at

Description tigr:9635.m00303
TID=OsAffx.28251.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0378011/11lectin receptor kinase 7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28251.1.S1_at--327--2391Chr07:1574111..1574135 (25 bp)
AAACTACGCACCTGGTAGGCACAAT
LOC_Os07g03780
OsAffx.28251.1.S1_at--766--1111Chr07:1574065..1574089 (25 bp)
AGTGTTCACAGGCAAGGCATCTCCT
LOC_Os07g03780
OsAffx.28251.1.S1_at--297--9271Chr07:1574044..1574068 (25 bp)
TCCTGCCACAGACATATTTGCCTTT
LOC_Os07g03780
OsAffx.28251.1.S1_at--1135--10231Chr07:1574022..1574046 (25 bp)
TTTGGCGTATTCCTTCTCGAAGTCA
LOC_Os07g03780
OsAffx.28251.1.S1_at--393--2291Chr07:1573988..1574012 (25 bp)
AAAGGCCACTCAACAACAATCAACA
LOC_Os07g03780
OsAffx.28251.1.S1_at--352--10091Chr07:1573835..1573859 (25 bp)
TAGGTCTATTGTGTTCTCACCCAAT
LOC_Os07g03780
OsAffx.28251.1.S1_at--468--5551Chr07:1573803..1573827 (25 bp)
GAAAGGCCTACCATGAGTCAAGTCC
LOC_Os07g03780
OsAffx.28251.1.S1_at--971--8231Chr07:1573741..1573765 (25 bp)
GGCACCGTCGGAGCTGAAGTTCAAC
LOC_Os07g03780
OsAffx.28251.1.S1_at--841--2491Chr07:1573719..1573743 (25 bp)
AACATGGTGGCTCTCATGCAGGGCC
LOC_Os07g03780
OsAffx.28251.1.S1_at--503--1091Chr07:1573700..1573724 (25 bp)
AGGGCCAAGGCTTCGACTCGTATGT
LOC_Os07g03780
OsAffx.28251.1.S1_at--533--8731Chr07:1573678..1573702 (25 bp)
TGTCTTGCCATGTCTGTCTTTGTCG
LOC_Os07g03780
Target Sequence 
AAACTACGCACCTGGTAGGCACAATGGGGTACCTAGCCCCAGAGCTAGTGTTCACAGGCAAGGCATCTCCTGCCACAGAC
ATATTTGCCTTTGGCGTATTCCTTCTCGAAGTCACTTGTGGACAAAGGCCACTCAACAACAATCAACAAGATAATCAACC
CCCAATGCTGGTTGATTGGGTCCTTGAGCACTGGCAGAAAGGATTACTGCCTGAGACAGTAGACAAAAGATTGCAGGGCA
ACTACAATGTTGATGAGGCATGTCTAGTGCTGAAGCTAGGTCTATTGTGTTCTCACCCAATCGCCATGGAAAGGCCTACC
ATGAGTCAAGTCCAGAGATACCTCGACGGCGACGCGCCGCTGCCAGAGTTGGCACCGTCGGAGCTGAAGTTCAACATGGT
GGCTCTCATGCAGGGCCAAGGCTTCGACTCGTATGTCTTGCCATGTCTGTCTTTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis