Browse Element(s) Details


Os.44546.1.A1_x_at

Description gb:NM_186204.1
DB_XREF= gi:34899493
GEN=P0483E09.2
TID=Os.44546.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44546 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) KNOX class homeodomain protein (P0483E09.2), mRNA.
PROD=KNOX class homeodomain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0377010/11Homeobox protein rough sheath 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03760OsAffx.16069.1.S1_at11/117+1539463..1541976Mov34/MPN/PAD-1 family protein
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44546.1.A1_x_at--650--9331Chr07:1565455..1565479 (25 bp)
TCGCCTGCGGTTTTACTTCTATTTA
LOC_Os07g03770
Os.44546.1.A1_x_at--786--10571Chr07:1565471..1565495 (25 bp)
TTCTATTTACACACATGCTCCTTCT
LOC_Os07g03770
Os.44546.1.A1_x_at--5--8011NONE
GGAGGCTTACCGCATTGTAAATCTG
NONE
Os.44546.1.A1_x_at--375--791Chr07:1569527..1569551 (25 bp)
ATGTGTTGGTTCTTCTGAGGATGAC
LOC_Os07g03770
Os.44546.1.A1_x_at--635--2111Chr07:1569550..1569574 (25 bp)
ACATGGACCCAAGTGGCCGCGAAAA
LOC_Os07g03770
Os.44546.1.A1_x_at--955--7631Chr07:1569736..1569760 (25 bp)
GGGAGCTGCACTACAAGTGGCCTTA
LOC_Os07g03770
Os.44546.1.A1_x_at--928--8411Chr07:1569754..1569920 (25 bp)
GGCCTTACCCCTCAGAGACGGAGAA
LOC_Os07g03770
Os.44546.1.A1_x_at--839--71Chr07:1569922..1569946 (25 bp)
ATTGCGCTTGCGGAATCGACAGGAC
LOC_Os07g03770
Os.44546.1.A1_x_at--947--8131Chr07:1570011..1570035 (25 bp)
GGACATGCCGTTCGTCATGATGGAA
LOC_Os07g03770
Os.44546.1.A1_x_at--59--2911Chr07:1570034..1570058 (25 bp)
AAGGTTTTCACCCACAGAATGCTGC
LOC_Os07g03770
Os.44546.1.A1_x_at--979--4931Chr07:1570060..1570084 (25 bp)
GCATTGTACATGGATGGCCCGTTCA
LOC_Os07g03770
Target Sequence 
TCGCCTGCGGTTTTACTTCTATTTACACACATGCTCCTTCTGCTTCTTCTCTTCTGCTGCTGCTGCTGCTGCTGATGATG
ATGATCTCGTCGTCGGCGGCGATGGCGGCGGCGGCGGCGGCGGAGGCTTACCGCATTGTAAATCTGAATGTGTTGGTTCT
TCTGAGGATGACATGGACCCAAGTGGCCGCGAAAACGAGCCGCCTGAGATCGACCCGCGCGCTGAGGATAAGGAGCTCAA
GTTTCAGCTTCTGAAGAAGTACAGTGGCTACTTGAGCAGCCTAAGGCAAGAATTTTCCAAGAAAAAGAAGAAAGGAAAGC
TGCCTAAGGAGGCCAGGCAGAAGCTGCTTCACTGGTGGGAGCTGCACTACAAGTGGCCTTACCCCTCAGAGACGGAGAAG
ATTGCGCTTGCGGAATCGACAGGACTAGATCAGAAGCAGATCAACAACTGGTTCATCAACCAGAGGAAACGGCACTGGAA
GCCATCGGAGGACATGCCGTTCGTCATGATGGAAGGTTTTCACCCACAGAATGCTGCTGCATTGTACATGGATGGCCCGT
TCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44546.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis