Browse Element(s) Details


Os.2254.1.S1_at

Description gb:AF050181.1
DB_XREF= gi:2935574
GEN=Oskn3
TID=Os.2254.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2254 (NCBI UniGene Cluster)
DEF=Oryza sativa strain Indica IR58 KNOX class homeodomain protein (Oskn3) mRNA, complete cds.
PROD=KNOX class homeodomain protein
FL= gb:AB016071.1 gb:AF050181.1 gb:AK111877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0377011/11Homeobox protein rough sheath 1, putative, expressed
LOC_Os08g317401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03760OsAffx.16069.1.S1_at11/117+1539463..1541976Mov34/MPN/PAD-1 family protein
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2254.1.S1_at--182--3791Chr07:1570105..1570129 (25 bp)
CTCGGTTCGTGAACCTCGATCTCGA
LOC_Os07g03770
Os.2254.1.S1_at--533--6411Chr07:1570122..1570146 (25 bp)
GATCTCGATCATCGGCGTGTTTGAT
LOC_Os07g03770
Os.2254.1.S1_at--88--6371Chr07:1570151..1570175 (25 bp)
GATCCAATGCCAAGATAAATTGATC
LOC_Os07g03770
Os.2254.1.S1_at--414--2231Chr07:1570167..1570191 (25 bp)
AAATTGATCATGGAATGTATTCAGC
LOC_Os07g03770
Os.2254.1.S1_at--1112--5271Chr07:1570179..1570203 (25 bp)
GAATGTATTCAGCATGCGTTGCAAT
LOC_Os07g03770
Os.2254.1.S1_at--430--4992Chr07:1570190..1570214 (25 bp)
GCATGCGTTGCAATGCATGGACATT
LOC_Os07g03770
Os.2254.1.S1_at--159--5011Chr07:1570204..1570228 (25 bp)
GCATGGACATTGTTATGGAATTTTT
LOC_Os07g03770
Os.2254.1.S1_at--553--10351Chr07:1570231..1570255 (25 bp)
TTTATTTACCTTTCACCGTGGATTG
LOC_Os07g03770
Os.2254.1.S1_at--155--10451Chr07:1570236..1570260 (25 bp)
TTACCTTTCACCGTGGATTGACAAG
LOC_Os07g03770
Os.2254.1.S1_at--335--7931Chr07:1570250..1570274 (25 bp)
GGATTGACAAGGTCTCGATCATGTT
LOC_Os07g03770
Os.2254.1.S1_at--847--2891Chr07:1570258..1570282 (25 bp)
AAGGTCTCGATCATGTTAGTGTTGA
LOC_Os07g03770
Target Sequence 
CTCGGTTCGTGAACCTCGATCTCGATCATCGGCGTGTTTGATGAGAGATCCAATGCCAAGATAAATTGATCATGGAATGT
ATTCAGCATGCGTTGCAATGCATGGACATTGTTATGGAATTTTTGGTTTATTTACCTTTCACCGTGGATTGACAAGGTCT
CGATCATGTTAGTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis