Browse Element(s) Details


OsAffx.28252.1.S1_at

Description gb:NM_186206.1
DB_XREF= gi:34899497
GEN=P0483E09.4
TID=OsAffx.28252.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (P0483E09.4), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0379011/11lectin receptor kinase 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03770Os.2254.1.S1_at11/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_x_at10/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03770Os.44546.1.A1_at8/117+1564387..1570486Homeobox protein rough sheath 1, putative, expressed
LOC_Os07g03780OsAffx.28251.1.S1_at11/117+1573621..1576914lectin receptor kinase 7, putative
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28252.1.S1_at--138--8651Chr07:1582530..1582554 (25 bp)
TGGGCTGCTTTACCTCCATGAAGAA
LOC_Os07g03790
OsAffx.28252.1.S1_at--564--8431Chr07:1582421..1582445 (25 bp)
GGCCTCTCAAGGTTGCACGATCATG
LOC_Os07g03790
OsAffx.28252.1.S1_at--1030--2531Chr07:1582383..1582407 (25 bp)
AACTACACACGTTGTTGGCACCATA
LOC_Os07g03790
OsAffx.28252.1.S1_at--429--1551Chr07:1582338..1582362 (25 bp)
AGCATTGACCGGCAAGGTGACTCCA
LOC_Os07g03790
OsAffx.28252.1.S1_at--840--4091Chr07:1582308..1582332 (25 bp)
CGACGTATTTTCCTTCGGCATATTA
LOC_Os07g03790
OsAffx.28252.1.S1_at--44--9031Chr07:1582242..1582266 (25 bp)
TGCACAAGGCATCCAACAAACGTTG
LOC_Os07g03790
OsAffx.28252.1.S1_at--327--4391Chr07:1582163..1582187 (25 bp)
GCCAACCTCCAAGCTGACTATGATA
LOC_Os07g03790
OsAffx.28252.1.S1_at--383--71Chr07:1582107..1582131 (25 bp)
ATTGCTATGCTCACATCCATCTGAA
LOC_Os07g03790
OsAffx.28252.1.S1_at--1047--7371Chr07:1582058..1582082 (25 bp)
GTGACGCAGTATCTCAATGGTGACA
LOC_Os07g03790
OsAffx.28252.1.S1_at--1133--7351Chr07:1582039..1582063 (25 bp)
GTGACATGCCACTACCAGAAACTAT
LOC_Os07g03790
OsAffx.28252.1.S1_at--266--4351Chr07:1582007..1582031 (25 bp)
CCAGGATTTGGCTTGTTTCACTTGA
LOC_Os07g03790
Target Sequence 
TGGGCTGCTTTACCTCCATGAAGAATGGGAGAAAGTAGTGATTCATCGAGATGTGAAGCCAAGCAACATACTCCTCGACA
ACAAGATGAATGCAAAGATAGGTGACTTTGGCCTCTCAAGGTTGCACGATCATGGAGCCAATCCACAAACTACACACGTT
GTTGGCACCATAGGGTACTTAGCTCCAGAAATAGCATTGACCGGCAAGGTGACTCCACTCGCCGACGTATTTTCCTTCGG
CATATTAGCCCTAGAGATTACATGTGGGCAGAAACCTATGAAGCAAAATGCACAAGGCATCCAACAAACGTTGGTTGGTT
GGGTGCTAGAATGTTGGAAAAAAGGATCAGTTGTTGATGCAGTTGATGCCAACCTCCAAGCTGACTATGATAATGCTGAA
GCAGGTTTAGTGCTAAAATTAGGATTGCTATGCTCACATCCATCTGAACACTCAAGACCGAATATGAGACAAGTGACGCA
GTATCTCAATGGTGACATGCCACTACCAGAAACTATTTCAAACCCAGGATTTGGCTTGTTTCACTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis