Browse Element(s) Details


Os.20817.5.A1_at

Description gb:NM_186214.1
DB_XREF= gi:34899513
GEN=P0483E09.12
TID=Os.20817.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.20817 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (P0483E09.12), mRNA.
PROD=putative receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0385011/11lectin protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03790OsAffx.28252.1.S1_at11/117+1581752..1583930lectin receptor kinase 7, putative, expressed
LOC_Os07g03810Os.34827.1.S1_at11/117+1589211..1591595lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.35253.1.S1_at11/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03820Os.46721.1.S1_x_at1/117+1593659..1595913lectin receptor kinase 7, putative, expressed
LOC_Os07g03830Os.44541.1.A1_at11/117+1598169..1600184lectin receptor kinase 7, putative
LOC_Os07g03840Os.11936.1.S1_at11/117+1601323..1603677Protein kinase domain containing protein, expressed
LOC_Os07g03850Os.20817.5.A1_at11/117+1605113..1607113lectin protein kinase, putative, expressed
LOC_Os07g03860Os.23507.1.A1_at10/117+1608526..1610723Protein kinase domain containing protein, expressed
LOC_Os07g03870Os.20817.1.S1_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03870Os.20817.1.S2_at11/117+1611157..1614544lectin receptor kinase 7, putative, expressed
LOC_Os07g03880OsAffx.16071.1.S1_at11/117+1616813..1618891lectin receptor kinase 7, putative, expressed
LOC_Os07g03890OsAffx.28253.1.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03890OsAffx.28253.2.S1_at11/117+1621065..1627039lectin receptor kinase 7, putative
LOC_Os07g03900OsAffx.5196.1.S1_at11/117+1629523..1631553Lectin receptor-type protein kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20817.5.A1_at--884--311Chr07:1605605..1605629 (25 bp)
ATACGATCATGGTTCTGACCCACAG
LOC_Os07g03850
Os.20817.5.A1_at--90--3711Chr07:1605550..1605574 (25 bp)
CTAGCCCCGGAATTGGTACGAACAG
LOC_Os07g03850
Os.20817.5.A1_at--724--6951Chr07:1605535..1605559 (25 bp)
GTACGAACAGGTAAGCCGTCTCCTC
LOC_Os07g03850
Os.20817.5.A1_at--708--9251Chr07:1605515..1605539 (25 bp)
TCCTCTTACGGATGTGTTCGCATTT
LOC_Os07g03850
Os.20817.5.A1_at--377--6711Chr07:1605500..1605524 (25 bp)
GTTCGCATTTGGCACATTTCTTCTT
LOC_Os07g03850
Os.20817.5.A1_at--484--91Chr07:1605287..1605311 (25 bp)
ATTCGCTAGGTCAAGGCCCAGTATG
LOC_Os07g03850
Os.20817.5.A1_at--619--3511Chr07:1605259..1605283 (25 bp)
CATGTCATGCTATACCTCAACGGAG
LOC_Os07g03850
Os.20817.5.A1_at--710--8051Chr07:1605238..1605262 (25 bp)
GGAGACATGCCACTTCCAGAGTTCA
LOC_Os07g03850
Os.20817.5.A1_at--774--1811Chr07:1605214..1605238 (25 bp)
ACGCCAACTGATACGAGCCTGAACA
LOC_Os07g03850
Os.20817.5.A1_at--482--2131Chr07:1605171..1605195 (25 bp)
ACAGAGGATTAGACCCTTCCGGTGT
LOC_Os07g03850
Os.20817.5.A1_at--216--9291Chr07:1605154..1605178 (25 bp)
TCCGGTGTGTCATATCCACAGCTGA
LOC_Os07g03850
Target Sequence 
ATACGATCATGGTTCTGACCCACAGACCACACGTGTGGTAGGTACCATGGGTTACCTAGCCCCGGAATTGGTACGAACAG
GTAAGCCGTCTCCTCTTACGGATGTGTTCGCATTTGGCACATTTCTTCTTGAGATCACCTGTGGGCAAAGGCCTGTCAAG
CAGAATGCACAAGGTGACCGATTTATGTTGGTTGATTGGGTACTTGAGCATTGGCAGAAAGGATCGATGGTGGAGACAAT
AGACAAGAGGCTACAAGGAAACTGCAACATAAATGAGGCATGCCTTGTGCTGAAACTTGGGCTCTTGTGCTCACAACCAT
TCGCTAGGTCAAGGCCCAGTATGAACCATGTCATGCTATACCTCAACGGAGACATGCCACTTCCAGAGTTCACGCCAACT
GATACGAGCCTGAACATGCTAGCATTGATGGAAAACAGAGGATTAGACCCTTCCGGTGTGTCATATCCACAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20817.5.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis