Browse Element(s) Details


Os.38899.1.S1_x_at

Description gb:NM_186229.1
DB_XREF= gi:34899543
TID=Os.38899.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1606_D04.10 (OJ1606_D04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1606_D04.10 (OJ1606_D04.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g039801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38899.1.S1_x_at--472--3411Chr07:1677853..1677877 (25 bp)
CAGCAGCAGCAAAGGGATGGAGTAC
LOC_Os07g03980
Os.38899.1.S1_x_at--209--8011Chr07:1677867..1677973 (25 bp)
GGATGGAGTACAGCCGAGCGACGAG
NONE
Os.38899.1.S1_x_at--302--2671Chr07:1677981..1678005 (25 bp)
AAGCCGAGCGTGTCAGCGGCGAGGA
NONE
Os.38899.1.S1_x_at--951--6151Chr07:1678033..1678057 (25 bp)
GAGGTAGTCGCTGAGCACCTCGACG
NONE
Os.38899.1.S1_x_at--533--871Chr07:1678115..1678139 (25 bp)
ATGGCCGGGTTGTCCCGGCAGATCC
NONE
Os.38899.1.S1_x_at--472--4173Chr07:1678257..1678281 (25 bp)
CGCCACTCGACGACGGAGACGAGAG
NONE
Os.38899.1.S1_x_at--791--2371Chr07:1678404..1678425 (22 bp)
AAACGCTTTGGATTGGGTCGAGCCT
NONE
Os.38899.1.S1_x_at--627--8551NONE
TGGATTGGGTCGAGCCTACTCCGGC
NONE
Os.38899.1.S1_x_at--797--5791Chr07:1678668..1678692 (25 bp)
GACGAAGACGACATCATCATGGACG
NONE
Os.38899.1.S1_x_at--529--5791Chr07:1678674..1678698 (25 bp)
GACGACATCATCATGGACGCGGTGG
NONE
Os.38899.1.S1_x_at--940--10671Chr07:1678777..1678801 (25 bp)
TTCCTTTCTCTGGTTTGGCAGCGTG
NONE
Target Sequence 
CAGCAGCAGCAAAGGGATGGAGTACAGCCGAGCGACGAGGAAGAGGAAGCCGAGCGTGTCAGCGGCGAGGAAGCTCGACG
GAGGAGGATCTCGCGGAGGAGGTAGTCGCTGAGCACCTCGACGCCGCCGCCACTGGGCCCGCGCTGCCGCCCGCCACGGT
GGGGAAAGAGAAGGAGGAGGATGGCCGGGTTGTCCCGGCAGATCCCGACGCCGCCGGGAGGGAGCGGGTCCGCGTCCCGC
GCGCCCTGCCGCCGCCCCCTCTGCGTCCCTTGCCACCGCCGCCTCCGCATCCGCTCCCGCCTCTGCGTCCCGCGCCGCCG
CCCGCCACTCGACGACGGAGACGAGAGAGAGGGAGAGAGAGACAAAAACGCTTTGGATTGGGTCGAGCCTACTCCGGCGC
CATGGTGGCACTGCCGCGGCGACGAAGACGACATCATCATGGACGCGGTGGAGGCCGCGAACGCCATCGCCGGCGTGGCG
AGCTTCAGGCGAGGATGTGTGGCCTTCGTCGGCTTCTGCTGCTCCTCACTTCCTTTCTCTGGTTTGGCAGCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38899.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis