Browse Element(s) Details


OsAffx.28254.1.S1_at

Description gb:NM_186230.1
DB_XREF= gi:34899545
GEN=OJ1606_D04.9
TID=OsAffx.28254.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein kinase Xa21 (OJ1606_D04.9), mRNA.
PROD=putative protein kinase Xa21
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0399011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03940OsAffx.19542.3.S1_x_at6/117+1656345..1660567retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g03950OsAffx.5197.1.S1_at11/117+1664392..1666302lectin receptor kinase 7, putative
LOC_Os07g03960Os.35257.1.S1_at11/117+1667610..1669621Hexose carrier protein HEX6, putative, expressed
LOC_Os07g03970OsAffx.10273.1.S1_at11/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03970Os.45971.1.S1_x_at2/117+1669750..1671771lectin receptor kinase 7, putative
LOC_Os07g03980OsAffx.19018.1.S1_x_at4/117+1677411..1677914hypothetical protein
LOC_Os07g03980Os.38899.1.S1_x_at1/117+1677411..1677914hypothetical protein
LOC_Os07g03990OsAffx.28254.1.S1_at11/117+1681486..1684908Leucine Rich Repeat family protein, expressed
LOC_Os07g04000OsAffx.28255.1.S1_at11/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04000Os.45971.1.S1_x_at1/117+1685595..1688245lectin receptor kinase 7, putative
LOC_Os07g04010OsAffx.28256.1.S1_at11/117+1691209..1693218lectin receptor kinase 7, putative
LOC_Os07g04020Os.7680.1.S1_at10/117+1698060..1699336expressed protein
LOC_Os07g04029Os.51605.1.S1_at9/117+1699591..1700115NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28254.1.S1_at--330--7931Chr07:1684197..1684221 (25 bp)
GGATTACTTACACAACCAGCACTAT
LOC_Os07g03990
OsAffx.28254.1.S1_at--1138--5631Chr07:1684278..1684302 (25 bp)
GACAGCACATGTTGCCGATTTCGGC
LOC_Os07g03990
OsAffx.28254.1.S1_at--1119--6291Chr07:1684324..1684348 (25 bp)
GATGAGAGCTCCATGGTTTCAGTAA
LOC_Os07g03990
OsAffx.28254.1.S1_at--744--1191Chr07:1684499..1684523 (25 bp)
AGTATTGTTCCATGGCTAAAGCCTC
LOC_Os07g03990
OsAffx.28254.1.S1_at--748--5351Chr07:1684578..1684602 (25 bp)
GAAGATGCCGACAGATCCCATGTTT
LOC_Os07g03990
OsAffx.28254.1.S1_at--1055--3851Chr07:1684612..1684636 (25 bp)
CTGAGCCTCAGGGAGTGGGTTCATC
LOC_Os07g03990
OsAffx.28254.1.S1_at--625--8631Chr07:1684627..1684651 (25 bp)
TGGGTTCATCAAGCATTTCCACTGA
LOC_Os07g03990
OsAffx.28254.1.S1_at--1125--10671Chr07:1684643..1684667 (25 bp)
TTCCACTGAGGCTTACTGATGTTGT
LOC_Os07g03990
OsAffx.28254.1.S1_at--299--7531Chr07:1684666..1684690 (25 bp)
GTGGACAGCAATCTTCTGCAGGACT
LOC_Os07g03990
OsAffx.28254.1.S1_at--550--371Chr07:1684756..1684780 (25 bp)
ATCACTGACCTTCTTGTACCAATAT
LOC_Os07g03990
OsAffx.28254.1.S1_at--40--9771Chr07:1684793..1684817 (25 bp)
TAATGTGTTGCAGCCATGCACCTGA
LOC_Os07g03990
Target Sequence 
GGATTACTTACACAACCAGCACTATGAGGTTGTGCTGCATTGTGACTTGAAACCTAGCAACGTGCTATTTGATGATGAGA
TGACAGCACATGTTGCCGATTTCGGCATTGCGAAACTGTTGCTAGGTGATGAGAGCTCCATGGTTTCAGTAAGCATGCTT
GGAACAATTGGGTACATGGCACATGAGTATTGTTCCATGGCTAAAGCCTCGAGGAAGAGCGATGTGTTCAGCTACGGGAT
CATGCTACTGGAAGTTTTCACTGGGAAGATGCCGACAGATCCCATGTTTGCTGGAGAGCTGAGCCTCAGGGAGTGGGTTC
ATCAAGCATTTCCACTGAGGCTTACTGATGTTGTGGACAGCAATCTTCTGCAGGACTGTGACAAAGATTGTGGTACTAAC
CACAATGATAATGCACATGAAGATGCTGCTTCTAGCAGGCTGATCACTGACCTTCTTGTACCAATATTTGAGGTGGGCCT
AATGTGTTGCAGCCATGCACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis