Browse Element(s) Details


OsAffx.28948.1.S1_at

Description tigr:9635.m04837
TID=OsAffx.28948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4796011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47930NANA7+28625728..28626270hypothetical protein
LOC_Os07g47940OsAffx.16757.1.S1_at11/117+28628830..28629325expressed protein
LOC_Os07g47950OsAffx.16758.1.S1_at11/117+28636154..28641083Protein kinase domain containing protein
LOC_Os07g47960OsAffx.28948.1.S1_at11/117+28648014..28649925expressed protein
LOC_Os07g47960Os.19277.1.S1_at1/117+28648014..28649925expressed protein
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein
LOC_Os07g47979NANA7+28655026..28655250NA
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28948.1.S1_at--1021--3331Chr07:28648708..28648732 (25 bp)
CACGGACGCGTCAGAGTACATCAAG
LOC_Os07g47960
OsAffx.28948.1.S1_at--169--3751Chr07:28648757..28648781 (25 bp)
CTCAACAAGGAGATCGCATGCGCAG
LOC_Os07g47960
OsAffx.28948.1.S1_at--402--5411Chr07:28648781..28648805 (25 bp)
GAAGCTGCAGCACTCAGACAGAACT
LOC_Os07g47960
OsAffx.28948.1.S1_at--771--10071Chr07:28648941..28648965 (25 bp)
TAGGGCACGGGTTCCTCATCAACGT
LOC_Os07g47960
OsAffx.28948.1.S1_at--106--9611Chr07:28648956..28648980 (25 bp)
TCATCAACGTGTTCTCTGACAAGAG
LOC_Os07g47960
OsAffx.28948.1.S1_at--163--3991Chr07:28648987..28649011 (25 bp)
CGGGTTGCTTGTTTCTATCCTGGAA
LOC_Os07g47960
OsAffx.28948.1.S1_at--300--10151Chr07:28649002..28649026 (25 bp)
TATCCTGGAAGCCTTCGATGAGCTG
LOC_Os07g47960
OsAffx.28948.1.S1_at--267--3891Chr07:28649024..28649048 (25 bp)
CTGGGCCTCAATGTACTCGAAGCAA
LOC_Os07g47960
OsAffx.28948.1.S1_at--382--5391Chr07:28649042..28649066 (25 bp)
GAAGCAACGGCATCTTGCGACGATA
LOC_Os07g47960
OsAffx.28948.1.S1_at--401--6451Chr07:28649063..28649087 (25 bp)
GATACCTTCCGTCTTGAGGCTGTAG
LOC_Os07g47960
OsAffx.28948.1.S1_at--424--9711Chr07:28649398..28649422 (25 bp)
TCAAGCAAACGGTGCTCCAGGCCAT
LOC_Os07g47960
Target Sequence 
CACGGACGCGTCAGAGTACATCAAGGAGCTAAAGCAGAAGGTTGTCAGGCTCAACAAGGAGATCGCATGCGCAGAAGCTG
CAGCACTCAGACAGAACTCCATCCCCACGGTGACGGTGGAAACCCTAGGGCACGGGTTCCTCATCAACGTGTTCTCTGAC
AAGAGCTGCCCCGGGTTGCTTGTTTCTATCCTGGAAGCCTTCGATGAGCTGGGCCTCAATGTACTCGAAGCAACGGCATC
TTGCGACGATACCTTCCGTCTTGAGGCTGTAGGAGGAGAGAACCAGGTGGATGAGCATGTCATCAAGCAAACGGTGCTCC
AGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis