Browse Element(s) Details


Os.11770.1.S1_at

Description gb:AF014469.1
DB_XREF= gi:2429289
GEN=POX5.1
TID=Os.11770.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11770 (NCBI UniGene Cluster)
DEF=Oryza sativa peroxidase (POX5.1) mRNA, complete cds.
PROD=peroxidase
FL= gb:AF014469.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g480409/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11770.1.S1_at--345--7091Chr07:28683809..28683833 (25 bp)
GTCAACTCGTGATCTGATCGACCGG
LOC_Os07g48040
Os.11770.1.S1_at--582--6391Chr07:28683824..28683848 (25 bp)
GATCGACCGGTTTGTATATATCCAG
LOC_Os07g48040
Os.11770.1.S1_at--324--6891Chr07:28683837..28683861 (25 bp)
GTATATATCCAGACGCTGGGCACTC
LOC_Os07g48040
Os.11770.1.S1_at--284--4731Chr07:28683851..28683875 (25 bp)
GCTGGGCACTCGACAACATGATTAA
LOC_Os07g48040
Os.11770.1.S1_at--26--6571Chr07:28683870..28683894 (25 bp)
GATTAATTACCAGTGCACGAATGCA
LOC_Os07g48040
Os.11770.1.S1_at--178--1051NONE
AGGTGAAACATACTTCTCCGTCCTA
NONE
Os.11770.1.S1_at--805--7071NONE
GTCCTAGATTCTCCGTCCTAGAAAG
NONE
Os.11770.1.S1_at--149--7851Chr07:28684031..28684055 (25 bp)
GGTACGCTCGTATTAGCATACGCAA
LOC_Os07g48040
Os.11770.1.S1_at--84--4971Chr07:28684046..28684070 (25 bp)
GCATACGCAATTATAGTCCTTTAAA
LOC_Os07g48040
Os.11770.1.S1_at--724--5271Chr07:28684114..28684138 (25 bp)
GAATGTTACTGAATCTGCGTCCGTT
LOC_Os07g48040
Os.11770.1.S1_at--862--4651Chr07:28684130..28684154 (25 bp)
GCGTCCGTTTATTAGCAGGTTTGCA
LOC_Os07g48040
Target Sequence 
GTCAACTCGTGATCTGATCGACCGGTTTGTATATATCCAGACGCTGGGCACTCGACAACATGATTAATTACCAGTGCACG
AATGCATCAAGGAAAGAATTCCAGTTGCAATTAATTACAGGTGAAACATACTTCTCCGTCCTAGATTCTCCGTCCTAGAA
AGAATCCAATCCTAACAATGAAATCTTGACACATGTTCGTTATTAGGATTAGATTTTTTTTTCTTGGAACGGAGGGGGTA
CGCTCGTATTAGCATACGCAATTATAGTCCTTTAAAATCGTAGAGCATTCAGTGAAGATGTCACCGAGAATGTCANGAGG
AATGTTACTGAATCTGCGTCCGTTTATTAGCAGGTTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis