Browse Element(s) Details


Os.57547.1.S1_at

Description gb:AF247700.2
DB_XREF= gi:8901179
TID=Os.57547.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57547 (NCBI UniGene Cluster)
DEF=Oryza sativa peroxidase POC1 mRNA, complete cds.
PROD=peroxidase POC1
FL= gb:AF247700.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g480509/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57547.1.S1_at--404--2491Chr07:28688301..28688325 (25 bp)
AACATCGCGCCCAAGACGGGAACAA
LOC_Os07g48050
Os.57547.1.S1_at--6--1391Chr07:28688314..28688338 (25 bp)
AGACGGGAACAAACGGCCAGATCAG
LOC_Os07g48050
Os.57547.1.S1_at--65--9411Chr07:28688361..28688385 (25 bp)
TCGTAAGCGAGTACCCTGCAGACAC
LOC_Os07g48050
Os.57547.1.S1_at--1055--631Chr07:28688419..28688443 (25 bp)
ATGCAGTTATGCACGTATAAGACGA
LOC_Os07g48050
Os.57547.1.S1_at--720--2211NONE
ACAACCACCACGACTGAATGAATAG
NONE
Os.57547.1.S1_at--95--7851Chr07:28688517..28688541 (25 bp)
GGTACATGCAGATTTGCCTTGCTCT
LOC_Os07g48050
Os.57547.1.S1_at--966--3871Chr07:28688540..28688564 (25 bp)
CTGTTTCTTGTTCCATCTGTATGTG
LOC_Os07g48050
Os.57547.1.S1_at--527--2591Chr07:28688609..28688633 (25 bp)
AACGAAATTTCTGGTGCAAAGGCAC
LOC_Os07g48050
Os.57547.1.S1_at--272--5131Chr07:28688624..28688648 (25 bp)
GCAAAGGCACGGAGGATTATACTAT
LOC_Os07g48050
Os.57547.1.S1_at--940--7931Chr07:28688637..28688661 (25 bp)
GGATTATACTATACTCATCTTCTAA
LOC_Os07g48050
Os.57547.1.S1_at--487--10411Chr12:21858253..21858273 (21 bp)
TTATTCCTACAAGCCAAATTTCTGC
NONE
Target Sequence 
AACATCGCGCCCAAGACGGGAACAAACGGCCAGATCAGGCTCAGCTGCTCCAAGGTGAACTCGTAAGCGAGTACCCTGCA
GACACTGCAGTAAGTAGTAACAACGTTTGTAGCAGTATATGCAGTTATGCACGTATAAGACGATGGAGTGCGTGAAAAAA
TAAGGACCCCCACAACCACCACGACTGAATGAATAGCAATGTGTACGTGGAGATGTGGTACATGCAGATTTGCCTTGCTC
TGTTTCTTGTTCCATCTGTATGTGCATGGAATACAGAGGACAGAGGGGCATATGCATGGCGTATATGTAACGAAATTTCT
GGTGCAAAGGCACGGAGGATTATACTATACTCATCTTCTAAATATTATTCCTACAAGCCAAATTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis