Browse Element(s) Details


Os.27143.1.S1_at

Description gb:AK060984.1
DB_XREF= gi:32971002
TID=Os.27143.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B02, full insert sequence.
FL= gb:AK060984.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4806011/11Cationic peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed
LOC_Os07g48010Os.2237.1.S1_at11/117+28667805..28669692Peroxidase 2 precursor, putative, expressed
LOC_Os07g48020Os.22086.1.S1_at11/117+28672061..28673740Peroxidase 2 precursor, putative, expressed
LOC_Os07g48030Os.11556.1.S1_at11/117+28676699..28678322Peroxidase 2 precursor, putative, expressed
LOC_Os07g48040Os.11770.1.S1_at9/117+28682439..28684169Peroxidase 2 precursor, putative, expressed
LOC_Os07g48050Os.57547.1.S1_at9/117+28686750..28688678Peroxidase 2 precursor, putative, expressed
LOC_Os07g48060Os.27143.1.S1_at11/117+28688926..28690947Cationic peroxidase 1 precursor, putative, expressed
LOC_Os07g48070OsAffx.28949.1.S1_x_at8/117+28691856..28692365hypothetical protein
LOC_Os07g48080Os.54393.1.S1_at11/117+28697148..28699214expressed protein
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27143.1.S1_at--75--9531Chr07:28689452..28689476 (25 bp)
TCTACAACGAGACCGACACGCTGGA
LOC_Os07g48060
Os.27143.1.S1_at--564--1871Chr07:28689245..28689269 (25 bp)
ACGAGCTGGTCAAGTACTACGGCGA
LOC_Os07g48060
Os.27143.1.S1_at--66--2211Chr07:28689212..28689236 (25 bp)
ACAAGTTCTGGGAGGACTTCGGCGC
LOC_Os07g48060
Os.27143.1.S1_at--1060--5431Chr07:28689127..28689151 (25 bp)
GAACTGCCGGGTTGTTAACCAGTGA
LOC_Os07g48060
Os.27143.1.S1_at--461--511Chr07:28689099..28689123 (25 bp)
ATCGATCGATCCTGGTGTGGTCAAG
LOC_Os07g48060
Os.27143.1.S1_at--491--8591Chr07:28689082..28689106 (25 bp)
TGGTCAAGCGACACACGACACGAGT
LOC_Os07g48060
Os.27143.1.S1_at--376--5631Chr07:28689066..28689090 (25 bp)
GACACGAGTCATCGCCACGAATTTG
LOC_Os07g48060
Os.27143.1.S1_at--665--3351Chr07:28689051..28689075 (25 bp)
CACGAATTTGCATGGCACCTGTGGT
LOC_Os07g48060
Os.27143.1.S1_at--359--3371Chr07:28689036..28689060 (25 bp)
CACCTGTGGTAGCTGCTGATTTCTT
LOC_Os07g48060
Os.27143.1.S1_at--975--9471Chr07:28688989..28689013 (25 bp)
TCTGATTTTGTGATGGCCTGCTCTT
LOC_Os07g48060
Os.27143.1.S1_at--314--8431Chr07:28688975..28688999 (25 bp)
GGCCTGCTCTTGTATTTGAATTGTT
LOC_Os07g48060
Target Sequence 
TCTACAACGAGACCGACACGCTGGACCCGGCCTACGCCGCGGCGCTCGAGGAGCAGTGCCCCATCGTCGGCGACGACGAG
GCGCTCGCCTCGCTGGACGACACGCCGACCACCGTGGACACCGACTACTACCAGGGCCTCACGCAGGGCCGCGCGCTGCT
GCACACGGACCAGCAGCTGTACCAGGGCGGCGGCGGCGGCGACAGCGACGAGCTGGTCAAGTACTACGGCGAGAACCCGG
ACAAGTTCTGGGAGGACTTCGGCGCCGCCATGGTGAAGATGGGCAACATCAGCCCGCTCACCGGCGACGACGGCGAGATC
AGGGAGAACTGCCGGGTTGTTAACCAGTGAGTGATCGATCGATCCTGGTGTGGTCAAGCGACACACGACACGAGTCATCG
CCACGAATTTGCATGGCACCTGTGGTAGCTGCTGATTTCTTGAAGGGNGTGCTTGCATGTACTTCTGATTTTGTGATGGC
CTGCTCTTGTATTTGAATTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis