Browse Element(s) Details


Os.4627.1.S1_x_at

Description gb:AK058819.1
DB_XREF= gi:32968837
TID=Os.4627.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4627 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141O10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G04, full insert sequence.
FL= gb:AK058819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4810011/11CBL-interacting serine/threonine-protein kinase 15, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48090Os.17787.1.S1_at6/117+28709056..28710778Protein kinase domain containing protein, expressed
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0005829cellular_componentcytosol
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4627.1.S1_x_at--800--6531Chr07:28725807..28725831 (25 bp)
GATTTTGACTCCTTCAATAGCGCTC
LOC_Os07g48100
Os.4627.1.S1_x_at--1075--5351Chr07:28725772..28725796 (25 bp)
GAAGAAGCCGTCCAACTTGAATGCT
LOC_Os07g48100
Os.4627.1.S1_x_at--222--5691Chr07:28725722..28725746 (25 bp)
GACTTGACCTCTCTGGTATGTTTGA
LOC_Os07g48100
Os.4627.1.S1_x_at--282--2791Chr07:28725683..28725707 (25 bp)
AAGAGTCCAAATTCACATCCACCAG
LOC_Os07g48100
Os.4627.1.S1_x_at--999--2871Chr07:28725618..28725642 (25 bp)
AAGGGCTTGCGGTTGAAGCTCACAA
LOC_Os07g48100
Os.4627.1.S1_x_at--88--5051Chr07:28725525..28725549 (25 bp)
GCAGAGATATTCGAGGTTACCCCAA
LOC_Os07g48100
Os.4627.1.S1_x_at--118--6771Chr07:28725510..28725534 (25 bp)
GTTACCCCAAACTTTCATCTTGTGG
LOC_Os07g48100
Os.4627.1.S1_x_at--183--1511Chr07:28725374..28725398 (25 bp)
AGCAGCAGCAGCCAACGTGCTAAAA
LOC_Os07g48100
Os.4627.1.S1_x_at--568--191Chr07:28725322..28725346 (25 bp)
ATTTGAGTCGACTTCCAATCGTTTA
LOC_Os07g48100
Os.4627.1.S1_x_at--686--3191Chr07:28725307..28725331 (25 bp)
CAATCGTTTATGTATTTCTGCAGCT
LOC_Os07g48100
Os.4627.1.S1_x_at--699--3391Chr07:28725287..28725311 (25 bp)
CAGCTTTTGTTCCTCTTGTTATTCA
LOC_Os07g48100
Target Sequence 
GATTTTGACTCCTTCAATAGCGCTCCAACATTGGAGAAGAAGCCGTCCAACTTGAATGCTTTTGATATAATTTCTTTGTC
AACTGGACTTGACCTCTCTGGTATGTTTGAGGAGTCTGATAAGAAAGAGTCCAAATTCACATCCACCAGTACAGCTTCAA
CAATCATATCTAAGATTGAGGATATTGCCAAGGGCTTGCGGTTGAAGCTCACAAAGAAAGATGGTGGACTGTTGAAGATG
GAAGGCTCCAAGCCTGGAAGGAAAGGTGTTATGGGCATTGATGCAGAGATATTCGAGGTTACCCCAAACTTTCATCTTGT
GGAGCTAAAGAAACACTTGAATACCGTAAGGTCTTGAACCAAGAGATGAGACCAGCTTTGAAGGACATAGTCTGGGCTTG
GCAGGGTGAGCAACCGAAGCAGCAGCAGCAGCCAACGTGCTAAAAAACTTTGACAAGGGCAAGTTTTTTGCAATTTGAGT
CGACTTCCAATCGTTTATGTATTTCTGCAGCTTTTGTTCCTCTTGTTATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4627.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis