Browse Element(s) Details


OsAffx.16760.1.S1_at

Description tigr:9635.m04855
TID=OsAffx.16760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4814011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48100Os.4627.1.S1_x_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48100Os.4627.2.S1_at11/117+28725095..28727912CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os07g48110Os.56227.1.S1_s_at11/117+28730154..28730624expressed protein
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16760.1.S1_at--436--3531Chr07:28751557..28751581 (25 bp)
CATGCGGTGGGATGCTCGCGCTCTT
LOC_Os07g48140
OsAffx.16760.1.S1_at--207--4671Chr07:28751554..28751578 (25 bp)
GCGGTGGGATGCTCGCGCTCTTCAA
LOC_Os07g48140
OsAffx.16760.1.S1_at--225--4251Chr07:28751500..28751524 (25 bp)
CCGTGGGCAAGATGAACAGCAGCCG
LOC_Os07g48140
OsAffx.16760.1.S1_at--628--7751Chr07:28751430..28751454 (25 bp)
GGTGTTCTGGCCACTCATGTCCATG
LOC_Os07g48140
OsAffx.16760.1.S1_at--952--3531Chr07:28751356..28751380 (25 bp)
CATCGTCGTCCACTGACGACGACAG
LOC_Os07g48140
OsAffx.16760.1.S1_at--309--8011Chr07:28751184..28751208 (25 bp)
GGAGGCGTGCAGAAGCTTCGAGAAG
LOC_Os07g48140
OsAffx.16760.1.S1_at--870--1551Chr07:28751171..28751195 (25 bp)
AGCTTCGAGAAGCATCTGATGGAGA
LOC_Os07g48140
OsAffx.16760.1.S1_at--747--971Chr07:28751104..28751128 (25 bp)
AGGAGCTCCTGTGCTGCTGGGAGAA
LOC_Os07g48140
OsAffx.16760.1.S1_at--130--9111Chr07:28751093..28751117 (25 bp)
TGCTGCTGGGAGAAGCTCAGGTCGC
LOC_Os07g48140
OsAffx.16760.1.S1_at--306--1951Chr07:28751038..28751062 (25 bp)
ACGGCGAGCTCTGCATGGACCTCTT
LOC_Os07g48140
OsAffx.16760.1.S1_at--206--1591Chr07:28751032..28751056 (25 bp)
AGCTCTGCATGGACCTCTTCTCCGG
LOC_Os07g48140
Target Sequence 
CATGCGGTGGGATGCTCGCGCTCTTCAAGAGGCGCCCGCGGGCGCTGCTCCGCCGCGCCGTGGGCAAGATGAACAGCAGC
CGGCGCCGGCGCCGCCGCGCGGCGGGCAGCTTCAGCTCCGTCCGCGCGGTGTTCTGGCCACTCATGTCCATGCGCTCCGA
CGCCGACCGCAACGACGTCGCCGCCGCTGACCGGCCGCCGGCATCGTCGTCCACTGACGACGACAGCGGCGGCGGCGGCC
TGCGCGCGCCGTCGCCGTCGCTCGACACGCCCGCGTCGACGACGGCCGCTCGGGTGCTGGCGCTGCAGGCCCAGCTCGGC
GAGGCCGCGGCGGCGTCGACGAAGCCGAGCAGCGGTGGCGACGACGGCGTGGAGGAGGCGTGCAGAAGCTTCGAGAAGCA
TCTGATGGAGATGCTGGTGGAGGAGAGGAAGGTGAGGGACCTCATGGACGTCGAGGAGCTCCTGTGCTGCTGGGAGAAGC
TCAGGTCGCCGGTGTTCGTCCAGCTCGTCGGCCGCTTCTACGGCGAGCTCTGCATGGACCTCTTCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis