Browse Element(s) Details


Os.54703.1.S1_at

Description gb:AK106500.1
DB_XREF= gi:32991709
TID=Os.54703.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54703 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E10, full insert sequence.
FL= gb:AK106500.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4815011/11uncharacterized plant-specific domain TIGR01568 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48120OsAffx.28950.1.S1_at11/117+28733548..28737411hypothetical protein
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein
LOC_Os07g48180Os.54213.1.S1_at9/117+28778192..28782213Transcription factor RF2b, putative
LOC_Os07g48190NANA7+28783042..28783539hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005730cellular_componentnucleolus
GO:0005856cellular_componentcytoskeleton
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54703.1.S1_at--812--7871Chr07:28758554..28758578 (25 bp)
GGTTCGTCCACCACGCGAAGCCGAG
LOC_Os07g48150
Os.54703.1.S1_at--41--4171Chr07:28758761..28758785 (25 bp)
CGCCGCGGGACCTCGAGGAGCTTCT
LOC_Os07g48150
Os.54703.1.S1_at--62--971Chr07:28758776..28758800 (25 bp)
AGGAGCTTCTCGCTTGCTACCTCGC
LOC_Os07g48150
Os.54703.1.S1_at--522--391Chr07:28758888..28758912 (25 bp)
ATCACCTAGCCCGATCAAGTGATCG
LOC_Os07g48150
Os.54703.1.S1_at--80--4051Chr07:28758911..28758935 (25 bp)
CGAGATTATTACTACGTACGTACCA
LOC_Os07g48150
Os.54703.1.S1_at--766--3711Chr07:28758922..28758946 (25 bp)
CTACGTACGTACCAGCAAAACGCAA
LOC_Os07g48150
Os.54703.1.S1_at--172--1851Chr07:28758941..28758965 (25 bp)
ACGCAAGATTAATTGCTACGTGCCC
LOC_Os07g48150
Os.54703.1.S1_at--1032--10711Chr07:28758953..28758977 (25 bp)
TTGCTACGTGCCCTGTACAGAGTGA
LOC_Os07g48150
Os.54703.1.S1_at--815--4531Chr07:28758962..28758986 (25 bp)
GCCCTGTACAGAGTGACCATGCATG
LOC_Os07g48150
Os.54703.1.S1_at--328--5851Chr07:28758976..28759000 (25 bp)
GACCATGCATGTGATGATCGAATTC
LOC_Os07g48150
Os.54703.1.S1_at--286--731Chr07:28759004..28759028 (25 bp)
ATGATTAAGATGATAGTCGTTGCAC
LOC_Os07g48150
Target Sequence 
GGTTCGTCCACCACGCGAAGCCGAGCAGCGGGAGGCGGAAGGGGCGGGTGGCGGCGCTGCCGGCCGACGCTACCAGCCGG
AGGCGGCGGCGGCGGCGGCGGTGCCGGTGGCTGTACGAGAGCCTGGTGGTGGTGAAGGAGTCGGCCGACCCGGAGGAGGA
CTTCCTGGAGAGCATGGCGGAGATGATCGCCGCGAACGACGTGCGCTCGCCGCGGGACCTCGAGGAGCTTCTCGCTTGCT
ACCTCGCCCTCAACGCCGCCGAGCACCACCGCGCCATCGTCGGCGCGTTCCGCCGCGCGTGGCTGCACGCCGCCGCCGCC
ACGGCGGCGCCGCCATCACCTAGCCCGATCAAGTGATCGAGATTATTACTACGTACGTACCAGCAAAACGCAAGATTAAT
TGCTACGTGCCCTGTACAGAGTGACCATGCATGTGATGATCGAATTCGGTATGATTAAGATGATAGTCGTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54703.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis