Browse Element(s) Details


Os.52034.1.S1_at

Description gb:AK064577.1
DB_XREF= gi:32974595
TID=Os.52034.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-E08, full insert sequence.
FL= gb:AK064577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4817010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein
LOC_Os07g48180Os.54213.1.S1_at9/117+28778192..28782213Transcription factor RF2b, putative
LOC_Os07g48190NANA7+28783042..28783539hypothetical protein
LOC_Os07g48200Os.20963.1.S1_at11/117+28784756..28791309B3 DNA binding domain containing protein, expressed
LOC_Os07g48210Os.40360.1.S1_at9/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40360.1.S1_x_at8/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40855.5.S1_x_at7/117+28796576..28799353hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52034.1.S1_at--520--6071Chr07:28769218..28769242 (25 bp)
GAGTTTGGATCTTTCGAACCTATCT
LOC_Os07g48170
Os.52034.1.S1_at--44--10451Chr07:28769194..28769218 (25 bp)
TTAGGTACTAGTTTTCTCTGCGAAA
LOC_Os07g48170
Os.52034.1.S1_at--850--1191Chr07:28769169..28769193 (25 bp)
AGTTTTGCGAAGAATTCCCACCTCT
LOC_Os07g48170
Os.52034.1.S1_at--283--9491Chr07:28769147..28769171 (25 bp)
TCTGCCTGCTAGAAAGTGGCCTGCA
LOC_Os07g48170
Os.52034.1.S1_at--375--1191Chr07:28769123..28769147 (25 bp)
AGTAGCCGCTGTTTCAACGCCTGTG
LOC_Os07g48170
Os.52034.1.S1_at--1158--2591Chr07:28769108..28769132 (25 bp)
AACGCCTGTGACTGTGAGCTCTTCG
LOC_Os07g48170
Os.52034.1.S1_at--29--1691Chr07:28768953..28768976 (24 bp)
AGCCAGAAGGGCTCTACCAACTGAG
LOC_Os07g48170
Os.52034.1.S1_at--954--3731Chr07:28768906..28768930 (25 bp)
CTCAAGGCTGGTGCTCGCAATGGAT
LOC_Os07g48170
Os.52034.1.S1_at--1056--6331Chr07:28768856..28768880 (25 bp)
GATGCTTTACTAGCTTGCTTCAGGA
LOC_Os07g48170
Os.52034.1.S1_at--104--3111Chr07:28768789..28768813 (25 bp)
AATAGCATGCTTTCAGCTGTCTGAA
LOC_Os07g48170
Os.52034.1.S1_at--1014--5451NONE
GAACTGGCTCATCTTTTTAGCTTTT
NONE
Target Sequence 
GAGTTTGGATCTTTCGAACCTATCTTAGGTACTAGTTTTCTCTGCGAAAAGTTTTGCGAAGAATTCCCACCTCTGCCTGC
TAGAAAGTGGCCTGCAGTAGCCGCTGTTTCAACGCCTGTGACTGTGAGCTCTTCGCCTGCTGAAACAGGAAGCAAGCCAG
AAGGGCTCTACCAACTGAGAGATGAAGCTGACTTCCCTCCTCTCAAGGCTGGTGCTCGCAATGGATTTAATCATAGAGTT
GGAAGATGAAGGATGCTTTACTAGCTTGCTTCAGGAGAAGTCTGATATCGTACAAAGCTTGGATGCTATTCCAATCGTAA
TAGCATGCTTTCAGCTGTCTGAAACTCCAATAATCCTTAGTGATACAATCATTAGGTCTTTAAGTGTTAACTCCTGGTAG
GAGCCTTAATTGTAAAAGAACTGGCTCATCTTTTTAGCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis