Browse Element(s) Details


Os.20963.1.S1_at

Description gb:AK101356.1
DB_XREF= gi:32986565
TID=Os.20963.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035A04, full insert sequence.
FL= gb:AK101356.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4820011/11B3 DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein
LOC_Os07g48180Os.54213.1.S1_at9/117+28778192..28782213Transcription factor RF2b, putative
LOC_Os07g48190NANA7+28783042..28783539hypothetical protein
LOC_Os07g48200Os.20963.1.S1_at11/117+28784756..28791309B3 DNA binding domain containing protein, expressed
LOC_Os07g48210Os.40360.1.S1_at9/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40360.1.S1_x_at8/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40855.5.S1_x_at7/117+28796576..28799353hypothetical protein
LOC_Os07g48229Os.26706.1.S1_at10/117+28807843..28818077Vacuolar sorting receptor 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20963.1.S1_at--9--1771Chr07:28785295..28785319 (25 bp)
ACCGGCCACTGGAGAACTACATGAA
LOC_Os07g48200
Os.20963.1.S1_at--452--1511Chr07:28785271..28785295 (25 bp)
AGCAGAACGGCCTGACGAGCTTGGC
LOC_Os07g48200
Os.20963.1.S1_at--642--1071Chr07:28785237..28785261 (25 bp)
AGGGAGCTCCAGCACATGTACAGGT
LOC_Os07g48200
Os.20963.1.S1_at--507--9871Chr07:28785219..28785243 (25 bp)
TACAGGTGCAGCCACGGTTCCGCAG
LOC_Os07g48200
Os.20963.1.S1_at--865--5711Chr07:28785068..28785092 (25 bp)
GACTCTGCTGCTGCTTTAGCTTGAG
LOC_Os07g48200
Os.20963.1.S1_at--916--451Chr07:28784921..28784945 (25 bp)
ATCTCATAGGGTTTCATTGTGTTCT
LOC_Os07g48200
Os.20963.1.S1_at--929--8331Chr07:28784853..28784877 (25 bp)
GGCTGTATGATACTGACTGTACCTT
LOC_Os07g48200
Os.20963.1.S1_at--448--9731Chr07:28784827..28784851 (25 bp)
TAATTTTTAACCACGAGGCTCACCT
LOC_Os07g48200
Os.20963.1.S1_at--770--911Chr07:28784812..28784836 (25 bp)
AGGCTCACCTTATTTGCTCATACCT
LOC_Os07g48200
Os.20963.1.S1_at--77--9611Chr07:28784795..28784819 (25 bp)
TCATACCTCGGTGGGCAGCTAGTTG
LOC_Os07g48200
Os.20963.1.S1_at--595--6871Chr07:28784764..28784788 (25 bp)
GTATCCAAAGCCAAGACATCCAGTA
LOC_Os07g48200
Target Sequence 
ACCGGCCACTGGAGAACTACATGAAGCAGAACGGCCTGACGAGCTTGGCTGGGGAGCAAGGGAGCTCCAGCACATGTACA
GGTGCAGCCACGGTTCCGCAGCCGGCTCTGGTGGAGAGCGAAGAGCGGACGTCCAACAACGACGGCGGGCGTGTGGCGAC
GGCAGANCAGCCGGAGAGCATGGCCGTCGACGAGGCTGGAGATAACCAGCCGGACAAGGCTGCCGGTGACTCTGCTGCTG
CTTTAGCTTGAGCTTGAGGCTGACCGTGTTGAGTGTGTGGATGGCAGGATGGGTATTTGAATTTGTTGTGTGNTGCATCT
TATCGGCTTCCCCNTTTTTTTACAGGAACAGCAGCTGGTGAGTTTTGATGTTGAGAATCTCATAGGGTTTCATTGTGTTC
TNGTAGTCCTTCACTTGCTTTCTTGNGTAAACACACGTGTAGAAGGCTGTATGATACTGACTGTACCTTGTAATTTTTAA
CCACGAGGCTCACCTTATTTGCTCATACCTCGGTGGGCAGCTAGTTGTTGTATGTATCCAAAGCCAAGACATCCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis