Browse Element(s) Details


Os.54213.1.S1_at

Description gb:AK102562.1
DB_XREF= gi:32987771
TID=Os.54213.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54213 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097I23, full insert sequence.
FL= gb:AK102562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g481809/11Transcription factor RF2b, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein
LOC_Os07g48180Os.54213.1.S1_at9/117+28778192..28782213Transcription factor RF2b, putative
LOC_Os07g48190NANA7+28783042..28783539hypothetical protein
LOC_Os07g48200Os.20963.1.S1_at11/117+28784756..28791309B3 DNA binding domain containing protein, expressed
LOC_Os07g48210Os.40360.1.S1_at9/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40360.1.S1_x_at8/117+28796576..28799353hypothetical protein
LOC_Os07g48210Os.40855.5.S1_x_at7/117+28796576..28799353hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54213.1.S1_at--500--2471Chr07:28778679..28778703 (25 bp)
AACACGCAGTTCAGCACCATGCAGG
LOC_Os07g48180
Os.54213.1.S1_at--650--9651NONE
TCAGCAGCTGCTACATCAATTCCAA
NONE
Os.54213.1.S1_at--691--3151Chr07:28778634..28778658 (25 bp)
AATTCCAACAACCTCATCCAAGTGT
LOC_Os07g48180
Os.54213.1.S1_at--73--8871Chr07:28778565..28778589 (25 bp)
TGATGCAGCAAGACTCGCTTGGGCG
LOC_Os07g48180
Os.54213.1.S1_at--410--9711Chr07:28778410..28778434 (25 bp)
TCAACAAATTGCTCCGTCCGTTTAG
LOC_Os07g48180
Os.54213.1.S1_at--582--10051Chr07:28778388..28778412 (25 bp)
TAGTTTTCTTTGTTCATAGTCTGAC
LOC_Os07g48180
Os.54213.1.S1_at--139--291Chr07:28778373..28778397 (25 bp)
ATAGTCTGACATGCCTTCCTGAACT
LOC_Os07g48180
Os.54213.1.S1_at--998--6851Chr07:28778283..28778307 (25 bp)
GTTTGTTGATCATCGTGTGGCTGAT
LOC_Os07g48180
Os.54213.1.S1_at--329--5691Chr07:28778250..28778274 (25 bp)
GACTTAGATATGCTCGTTTGGAAAC
LOC_Os07g48180
Os.54213.1.S1_at--868--491Chr07:28778225..28778249 (25 bp)
ATCGGGTTTATTTCTTGTGTGTTGT
LOC_Os07g48180
Os.54213.1.S1_at--509--6591Chr07:28778167..28778191 (25 bp)
GTGGGTTTCCAGTGACTTTTATGTA
NONE
Target Sequence 
AACACGCAGTTCAGCACCATGCAGGCGTTCAGCAGCTGCTACATCAATTCCAACAACCTCATCCAAGTGTCCCTAGCCAC
CAGATGCTATCCCACCCAAATTCCCTCTCTGATATGATGCAGCAAGACTCGCTTGGGCGGCTCCAAGGGCTGGACATTGG
CAAAGGACCAGTGGCTGTGAAGAATGAGGCAGAGGTAGTGGTGAAGTCTGAGGGTAGTTCAATATCTGCAGGTGAAAGCA
ACAGCACATTCTAATTATAGACCTACATGTCAACAAATTGCTCCGTCCGTTTAGTTTTCTTTGTTCATAGTCTGACATGC
CTTCCTGAACTGCTTCCCTCTCTCCCACTAGTTTTTTTTTTTCAATTCAATTCTTTCAATTTTAGTTACATTGTTTGTTT
GTTGATCATCGTGTGGCTGATCATGTAGAGACTTAGATATGCTCGTTTGGAAACATCGGGTTTATTTCTTGTGTGTTGTG
TGTTGTTTGATTTAGGGGGTGAGGGGCACTGAGTGGGTTTCCAGTGACTTTTATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54213.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis