Browse Element(s) Details


Os.11960.1.S1_at

Description gb:AK065079.1
DB_XREF= gi:32975097
TID=Os.11960.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11960 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093O17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001K24, full insert sequence.
FL= gb:AK099229.1 gb:AK065079.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4816011/11Alpha-galactosidase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48130Os.13483.1.S1_at11/117+28739827..28744207Potassium transporter 2, putative, expressed
LOC_Os07g48140OsAffx.16760.1.S1_at11/117+28750986..28751615hypothetical protein
LOC_Os07g48150Os.54703.1.S1_at11/117+28757768..28759028uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os07g48160Os.11960.1.S1_at11/117+28762733..28767467Alpha-galactosidase precursor, putative, expressed
LOC_Os07g48170Os.52034.1.S1_at10/117+28768642..28774392expressed protein
LOC_Os07g48180Os.54213.1.S1_at9/117+28778192..28782213Transcription factor RF2b, putative
LOC_Os07g48190NANA7+28783042..28783539hypothetical protein
LOC_Os07g48200Os.20963.1.S1_at11/117+28784756..28791309B3 DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004557molecular_functionalpha-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11960.1.S1_at--359--1791Chr07:28766642..28766666 (25 bp)
ACCGTCTGGCTGTTGTTTTATGGAA
LOC_Os07g48160
Os.11960.1.S1_at--34--5451Chr07:28766664..28766688 (25 bp)
GAACCGCTGTGAGGAGTCTGCCAAT
LOC_Os07g48160
Os.11960.1.S1_at--619--7891Chr07:28766722..28766746 (25 bp)
GGTTCATCTCCCTATTCTGTTAGAG
LOC_Os07g48160
Os.11960.1.S1_at--317--4571Chr07:28767138..28767162 (25 bp)
GCGCAAGTTGACGTGCATGACTGCA
LOC_Os07g48160
Os.11960.1.S1_at--10--2452Chr07:28767162..28767186 (25 bp)
AAAATGTATATTTTCACTCCCGCCG
LOC_Os07g48160
Os.11960.1.S1_at--1141--4491Chr07:28767183..28767207 (25 bp)
GCCGTCACCGTTGCATCAAGTTGAT
LOC_Os07g48160
Os.11960.1.S1_at--586--411Chr07:28767218..28767242 (25 bp)
ATCATGCCTGATGCTTTCCTGGAAG
LOC_Os07g48160
Os.11960.1.S1_at--580--8191Chr07:28767238..28767262 (25 bp)
GGAAGCACCCAGTATCTACTCAAAT
LOC_Os07g48160
Os.11960.1.S1_at--528--5251Chr07:28767273..28767297 (25 bp)
GAATCGTCCACCATTTTGGTCGAGG
LOC_Os07g48160
Os.11960.1.S1_at--983--10811Chr07:28767288..28767312 (25 bp)
TTGGTCGAGGCAACAGGTCTACTGA
LOC_Os07g48160
Os.11960.1.S1_at--794--5951Chr07:28767326..28767350 (25 bp)
GAGAATGCAGTTTTCCCGTTTCTAT
LOC_Os07g48160
Target Sequence 
ACCGTCTGGCTGTTGTTTTATGGAACCGCTGTGAGGAGTCTGCCAATATTATAGTAAAATTGCCATCTNTAGGCCTTGAT
GGTTCATCTCCCTATTCTGTTAGAGATCTGTGGAAGCATGAAACTCTATCAGAGAACGTTGTTGGAACTTTTGGGGCGCA
AGTTGACGTGCATGACTGCAAAATGTATATTTTCACTCCCGCCGTCACCGTTGCATCAAGTTGATCATGAAGAGCATCAT
GCCTGATGCTTTCCTGGAAGCACCCAGTATCTACTCAAATTAGACCTGATGAATCGTCCACCATTTTGGTCGAGGCAACA
GGTCTACTGAAATTTGCTTTGTGGAGAATGCAGTTTTCCCGTTTCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis