Browse Element(s) Details


Os.16798.1.S1_at

Description gb:AK102565.1
DB_XREF= gi:32987774
TID=Os.16798.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16798 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033097K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097K17, full insert sequence.
FL= gb:AK102565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1559011/11DnaJ domain containing protein, expressed
LOC_Os05g053542/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15550Os.54398.1.S1_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15550Os.54398.1.S1_x_at11/1112+8880531..8881980D-mannose binding lectin family protein, expressed
LOC_Os12g15560NANA12+8893439..8893989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15570NANA12+8895019..8899712retrotransposon protein, putative, unclassified
LOC_Os12g15580NANA12+8900137..8900964Zinc knuckle family protein
LOC_Os12g15590Os.16798.1.S1_at11/1112+8903836..8912514DnaJ domain containing protein, expressed
LOC_Os12g15600OsAffx.7605.1.S1_at11/1112+8912973..8913858hypothetical protein
LOC_Os12g15610NANA12+8915729..8916049hypothetical protein
LOC_Os12g15620NANA12+8917084..8920104retrotransposon protein, putative, unclassified
LOC_Os12g15630NANA12+8921247..8925858transposon protein, putative, unclassified
LOC_Os12g15640NANA12+8928170..8928959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15650NANA12+8929226..8933644retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16798.1.S1_at--266--431Chr12:8904358..8904382 (25 bp)
ATCTTGTCATGAAACGCCTCTGGGA
LOC_Os12g15590
Os.16798.1.S1_at--62--2552Chr01:42746193..42746216 (24 bp)
AACTCCTATTTGTCAAAGCTTGTGT
NONE
Os.16798.1.S1_at--736--4931Chr12:8904200..8904224 (25 bp)
GCTTGTGTCACAGTACGTTGCTTTA
LOC_Os12g15590
Os.16798.1.S1_at--827--9931Chr12:8904187..8904211 (25 bp)
TACGTTGCTTTATTGCCCTTTTAGG
LOC_Os12g15590
Os.16798.1.S1_at--636--9033Chr12:8904116..8904140 (25 bp)
TGCAGCCATCTGTCACTCCAAAACT
LOC_Os12g15590
Os.16798.1.S1_at--463--6232Chr12:8904037..8904061 (25 bp)
GATGGATAAACCAGCCCAAGGCCTT
LOC_Os12g15590
Os.16798.1.S1_at--949--2351Chr12:8903990..8904014 (25 bp)
AAAGCCATCTCATGTGCAAAGCCCA
LOC_Os12g15590
Os.16798.1.S1_at--364--4551Chr12:8903970..8903994 (25 bp)
GCCCACCCCATCTTTTCAAGATTAA
LOC_Os12g15590
Os.16798.1.S1_at--999--3311Chr12:8903945..8903969 (25 bp)
GAATACCAAGTTCTCCCAAAGATAG
LOC_Os12g15590
Os.16798.1.S1_at--279--2471Chr12:8903900..8903924 (25 bp)
AACAAACCAAGCAGTTCCCATGGGT
LOC_Os12g15590
Os.16798.1.S1_at--1075--3491Chr12:8903882..8903906 (25 bp)
CATGGGTTCCATGTACAATACAAAT
LOC_Os12g15590
Target Sequence 
ATCTTGTCATGAAACGCCTCTGGGAAAAGAACAATATGGAGAGGTATATTGCAGAGATGAGAAAGGAATCAAAGCGTAGA
AGATAGCTGTAGCATATTCAACAAGNACGTGGACCGAGAACCCCCTGGATGTCAGCAACNCAACTCCTATTTGTCAAAGC
TTGTGTCACAGTACGTTGCTTTATTGCCCTTTTAGGGATTAAAACAAAGAGATTAGGANCTAGTTTAGCAATCGTCTTCC
CNTGCAGCCATCTGTCACTCCAAAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAATTTCTCCATTTCNAACT
NTAGTTTTGAAAACATCAAAAAGGGAGTTTTGATGGATAAACCAGCCCAAGGCCTTGAAGAGTCTGTTTTTTTTNNNAAC
CAAAGCCATCTCATGTGCAAAGCCCACCCCATCTTTTCAAGATTAAGAATACCAAGTTCTCCCAAAGATAGGGGCCGACA
CACTCGGTCCCAACAAACCAAGCAGTTCCCATGGGTTCCATGTACAATACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16798.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis