Browse Element(s) Details


OsAffx.7605.1.S1_at

Description tigr:9640.m01518
TID=OsAffx.7605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1560011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15560NANA12+8893439..8893989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15570NANA12+8895019..8899712retrotransposon protein, putative, unclassified
LOC_Os12g15580NANA12+8900137..8900964Zinc knuckle family protein
LOC_Os12g15590Os.16798.1.S1_at11/1112+8903836..8912514DnaJ domain containing protein, expressed
LOC_Os12g15600OsAffx.7605.1.S1_at11/1112+8912973..8913858hypothetical protein
LOC_Os12g15610NANA12+8915729..8916049hypothetical protein
LOC_Os12g15620NANA12+8917084..8920104retrotransposon protein, putative, unclassified
LOC_Os12g15630NANA12+8921247..8925858transposon protein, putative, unclassified
LOC_Os12g15640NANA12+8928170..8928959retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g15650NANA12+8929226..8933644retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7605.1.S1_at--259--6211Chr12:8913434..8913458 (25 bp)
GAGGCGGTGTGCAGCGGCCGAGCGA
LOC_Os12g15600
OsAffx.7605.1.S1_at--523--991Chr12:8913410..8913434 (25 bp)
AGGAGGAGCAACTCCGACCCGGATG
LOC_Os12g15600
OsAffx.7605.1.S1_at--61--8071Chr12:8913406..8913430 (25 bp)
GGAGCAACTCCGACCCGGATGTGAC
LOC_Os12g15600
OsAffx.7605.1.S1_at--230--7651Chr12:8913355..8913379 (25 bp)
GGGATCTGGTCGTGCAGCCTGCCAT
LOC_Os12g15600
OsAffx.7605.1.S1_at--547--4351Chr12:8913320..8913344 (25 bp)
CCAGTTCGACCCGAGCATGGAGTGT
LOC_Os12g15600
OsAffx.7605.1.S1_at--969--5811Chr12:8913313..8913337 (25 bp)
GACCCGAGCATGGAGTGTGCCCAGA
LOC_Os12g15600
OsAffx.7605.1.S1_at--420--9351Chr12:8913277..8913301 (25 bp)
TCGCTGGCGTCGTGCGCGTCACCGT
LOC_Os12g15600
OsAffx.7605.1.S1_at--672--10651Chr12:8913221..8913245 (25 bp)
TTCCGGACACGCCATGCCAGCGGTG
LOC_Os12g15600
OsAffx.7605.1.S1_at--982--9051Chr12:8913086..8913110 (25 bp)
TGCATCCTCCGCATCTTGCCGGTGT
LOC_Os12g15600
OsAffx.7605.1.S1_at--442--4971Chr12:8913076..8913100 (25 bp)
GCATCTTGCCGGTGTGGCTCACCTG
LOC_Os12g15600
OsAffx.7605.1.S1_at--969--9931Chr12:8913014..8913038 (25 bp)
TACGTCATCCTTCAAGCGACGCAGT
LOC_Os12g15600
Target Sequence 
GAGGCGGTGTGCAGCGGCCGAGCGAGGAGGAGCAACTCCGACCCGGATGTGACCATCGAGGACGTCGGCGGCGGCGGCGG
GGATCTGGTCGTGCAGCCTGCCATTCGGCGCCGACCAGTTCGACCCGAGCATGGAGTGTGCCCAGAGGGGAGCCCCTTCG
CTGGCGTCGTGCGCGTCACCGTCGCTGCGCCCTCCGACGTCGACGAGTACCTCTTCCGGACACGCCATGCCAGCGGTGGC
GGTGGCGTCGTGTCGAGGCTCCCTTACACCAACCAGTTCAGGTTCCTCGACAAGGCCGTCATCGTGGTCGACGCCAAGAG
CGAGGTCGGCGCCGACGGTCACCCCAAGTGCATCCTCCGCATCTTGCCGGTGTGGCTCACCTGCATTGTCTACTACGTCG
TGTTCGCGCAGACGAACACCTACGTCATCCTTCAAGCGACGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis